Factsheet for PGSC0003DMT400035565

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g039650.2.1	Tomato	plastid	60.63	97.47
GSMUA_Achr2P14200_001	Banana	cytosol	74.8	31.35
PGSC0003DMT400054829	Potato	cytosol	70.08	28.16
HORVU3Hr1G068700.3	Barley	cytosol	71.65	27.49
VIT_00s0225g00140.t01	Wine grape	plastid	81.89	26.46
PGSC0003DMT400044713	Potato	cytosol	66.14	26.25
Zm00001d043600_P001	Maize	plastid	71.65	25.42
KRH74537	Soybean	endoplasmic reticulum, plastid	76.38	23.77
KRH69621	Soybean	plastid	74.8	23.28
EES01390	Sorghum	plastid	72.44	22.6
Os01t0723600-01	Rice	plastid	72.44	22.49
CDX97905	Canola	plastid	72.44	22.49
AT1G10700.1	Thale cress	plastid	72.44	22.38
TraesCS3A01G285700.1	Wheat	plastid	71.65	22.36
TraesCS3B01G319600.1	Wheat	plastid	71.65	22.36
TraesCS3D01G285500.2	Wheat	plastid	71.65	22.36
CDY19314	Canola	plastid	72.44	22.33
Bra019905.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	62.99	16.46
PGSC0003DMT400062265	Potato	plastid	18.9	6.05
PGSC0003DMT400056411	Potato	plastid	17.32	5.56
PGSC0003DMT400068395	Potato	plastid	17.32	5.5

Protein Annotations

Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116
GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	UniProt:M1B2H0	PFAM:PF00156	EnsemblPlantsGene:PGSC0003DMG400013675
PGSC:PGSC0003DMG400013675	EnsemblPlants:PGSC0003DMT400035565	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF45
SUPFAM:SSF53271	UniParc:UPI000295D5BD	:	:	:	:

Description

Ribose-phosphate pyrophosphokinase [Source:PGSC_GENE;Acc:PGSC0003DMG400013675]

Coordinates

chr4:-:45348297..45352137

Molecular Weight (calculated)

14070.9 Da

IEP (calculated)

8.842

GRAVY (calculated)

-0.257

Length

127 amino acids

Sequence
(BLAST)

001: MAYIDYQIVC AKVREGDQRI VRIKEGNPAG RHVVIVDDLV QSGGTLTECQ KVLAKHGAQK ISAYVTHGIF PNRSWQRFSH DKGGSPENGM TYFWITDSCP
101: QTVKEVKDKK PFEVLSLAAP IAAALQI

Best Arabidopsis Sequence Match ( AT1G10700.1 )
(BLAST)

001: MAAISPANAT TAASLSLPQF SSTSSSLSSS SSPSFLNFKT ASVSNRCIKC GVRSLENHSG HRSLDFLSNG DPISLINPNS SSPITMAAAT SESGSKSSKR
101: VCLFHSDETR DLAERIVAKS DCIELRSINW KKFDDGFPNL FIQNAQGIRG QHVAFLASFS SPAVIFEQLS VIYALPKLFV SSFTLVLPFF PTGTSERMED
201: EGDVATAFTL ARILSNIPTS RGGPTSLVTF DIHALQERFY FGDTILPCFE SGIPLLKSRL QSLPDSDNIS IAFPDDGAWK RFHKQLQHYP TIVCNKVRMG
301: DKRIVRIKEG DAEGRHVVIV DDLVQSGGTL IECQKVLAAH GAAKISAYVT HGIFPRSSWK RFKLDTKGDP AEGLSYFWIT DSCGMTVKEV MNKPPFEVLS
401: LAGSIASALQ V

Arabidopsis Description

PRS3Ribose-phosphate pyrophosphokinase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93Z66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.