CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P14200_001	Banana	cytosol	60.29	81.19
KRH69621	Soybean	plastid	77.21	77.21
PGSC0003DMT400035565	Potato	cytosol	23.77	76.38
HORVU3Hr1G068700.3	Barley	cytosol	61.52	75.83
VIT_00s0225g00140.t01	Wine grape	plastid	69.12	71.76
Solyc04g039650.2.1	Tomato	plastid	13.73	70.89
KRG98919	Soybean	cytosol	54.66	69.69
KRH46053	Soybean	cytosol, nucleus	53.92	68.75
CDX97905	Canola	plastid	65.44	65.28
Solyc04g039620.2.1	Tomato	plastid	51.47	64.81
CDY19314	Canola	plastid	64.95	64.32
AT1G10700.1	Thale cress	plastid	63.97	63.5
TraesCS3B01G319600.1	Wheat	plastid	62.75	62.9
TraesCS3D01G285500.2	Wheat	plastid	62.75	62.9
EES01390	Sorghum	plastid	62.75	62.9
TraesCS3A01G285700.1	Wheat	plastid	62.75	62.9
Os01t0723600-01	Rice	plastid	62.75	62.59
Zm00001d043600_P001	Maize	plastid	40.93	46.65
Bra019905.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	53.68	45.06
KRH66354	Soybean	nucleus	19.61	19.8
KRH57590	Soybean	nucleus	18.87	19.59
KRH04308	Soybean	plastid	19.36	19.46
KRH48933	Soybean	plastid	19.12	19.4

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	EntrezGene:100799836	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	EMBL:ACUP02000046
EnsemblPlantsGene:GLYMA_01G026800	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009165
GO:GO:0009987	GO:GO:0016740	UniProt:I1J550	EnsemblPlants:KRH74537	ProteinID:KRH74537	ProteinID:KRH74537.1
PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF45
InterPro:Pribosyltran_N	SMART:SM01400	SUPFAM:SSF53271	UniParc:UPI0002336FE5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:2819064..2823273

Molecular Weight (calculated)

45120.9 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.086

Length

408 amino acids

Sequence
(BLAST)

001: MAATPPLQSF SVLHSNKPSH SLLRPSSNKN RTFFSFTSNL RCEIKGFDFE SHRGWTIERV SDMSKDSTNS HTNPSSPLLS VSAVTSASQF PTKNAKKVVL
101: FYCAETKALA EKIAAETDAI ELRSISWGKF PDGFPNIFIP NAQGIRGMHV AFLASFSSPA VIFEQIPVIY ALPKLFIASF TLVLPFFPTG TSERMEDEGD
201: IATAFTLARL LSNIPISRGG PTSLVTFDIH ALQERFYFGD NILPCFESGI PLLKRRLQDL PDSDNISVAF PDDGAWKRFH KQLQHFPTIV CAKVREGDQR
301: IVRIKEGDPR GRHIVIVDDL VQSGGTLIEC QKVLAAHGAT KISAYVTHGI FPNKSWARFG HDNGGHPESA FTYFWITDSC PLTVKDVMNR PPFEILSLAS
401: SISASLQI

Best Arabidopsis Sequence Match ( AT1G10700.1 )
(BLAST)

001: MAAISPANAT TAASLSLPQF SSTSSSLSSS SSPSFLNFKT ASVSNRCIKC GVRSLENHSG HRSLDFLSNG DPISLINPNS SSPITMAAAT SESGSKSSKR
101: VCLFHSDETR DLAERIVAKS DCIELRSINW KKFDDGFPNL FIQNAQGIRG QHVAFLASFS SPAVIFEQLS VIYALPKLFV SSFTLVLPFF PTGTSERMED
201: EGDVATAFTL ARILSNIPTS RGGPTSLVTF DIHALQERFY FGDTILPCFE SGIPLLKSRL QSLPDSDNIS IAFPDDGAWK RFHKQLQHYP TIVCNKVRMG
301: DKRIVRIKEG DAEGRHVVIV DDLVQSGGTL IECQKVLAAH GAAKISAYVT HGIFPRSSWK RFKLDTKGDP AEGLSYFWIT DSCGMTVKEV MNKPPFEVLS
401: LAGSIASALQ V

Arabidopsis Description

PRS3Ribose-phosphate pyrophosphokinase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93Z66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.