CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48933	Soybean	plastid	96.78	97.26
Solyc10g024410.1.1	Tomato	cytosol, nucleus	66.58	92.76
GSMUA_Achr11P...	Banana	cytosol, plastid	74.5	89.32
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	69.8	84.94
VIT_15s0021g00460.t01	Wine grape	plastid	80.2	80.4
HORVU6Hr1G015080.5	Barley	mitochondrion	73.76	79.68
CDY23440	Canola	plastid	75.5	79.43
CDY30476	Canola	plastid	78.22	78.8
AT2G44530.1	Thale cress	plastid	75.99	77.92
Os02t0127700-02	Rice	plastid	76.24	77.78
PGSC0003DMT400056411	Potato	plastid	75.25	76.77
EES06216	Sorghum	plastid	75.5	76.63
Bra037645.1-P	Field mustard	plastid	78.22	76.33
Zm00001d015115_P001	Maize	plastid	75.0	75.94
KRH57590	Soybean	nucleus	73.02	75.06
TraesCS6A01G088200.2	Wheat	nucleus	74.5	74.69
TraesCS6B01G110600.1	Wheat	plastid	74.5	74.5
TraesCSU01G018200.1	Wheat	plastid	74.01	74.19
KRH04308	Soybean	plastid	72.52	72.17
KRH46053	Soybean	cytosol, nucleus	19.06	24.06
KRG98919	Soybean	cytosol	18.81	23.75
KRH69621	Soybean	plastid	20.54	20.34
KRH74537	Soybean	endoplasmic reticulum, plastid	19.8	19.61

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	EntrezGene:100816430	Gene3D:3.40.50.2020	MapMan:50.2.7	EMBL:ACUP02001941
EnsemblPlantsGene:GLYMA_03G100800	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009156
GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	GO:GO:0044249	UniProt:I1JMH3	EnsemblPlants:KRH66354
ProteinID:KRH66354	ProteinID:KRH66354.1	HAMAP:MF_00583_B	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like
InterPro:PRibTrfase_dom	InterPro:PRib_PP_synth_CS	ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF86	InterPro:Pribosyltran_N
InterPro:Rib-P_diPkinase	InterPro:Rib-P_diPkinase_bac	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251	UniParc:UPI0002336E92

Description

hypothetical protein

Coordinates

chr3:+:28980378..28988564

Molecular Weight (calculated)

43522.4 Da

IEP (calculated)

7.178

GRAVY (calculated)

0.091

Length

404 amino acids

Sequence
(BLAST)

001: MSTLLHSAPT SSPSFSRIIT PRFAFAPITR ISLRNGVRSK AIEAVKLENG RPSASEFVVS GSGNAIPSYV VAPNARVQDL VNRNDTRLRI FSGTANPALA
101: QEIACYLGLE LGKIKIKRFA DGEIYVQLQE SVRGCDVFLV QPTCPPANEN LMELLIMIDA CRRASAKNIT AVIPYFGYAR ADRKTQGRES IAAKLVANLI
201: TEAGANRVLA CDLHSGQSMG YFDIPVDHVY GQPVILDYLA SKTICSDDLV VVSPDVGGVA RARAFAKKLS DAPLAIVDKR RHGHNVAEVM NLIGDVRGKV
301: AVMVDDMIDT AGTIAKGAAL LHQEGAREVY ACTTHAVFSP PAIERLSSGL FQEVIITNTI PVAEQNYFPQ LTVLSVANLL GETVWRVHDD CSGGIEPYSS
401: LGID

Best Arabidopsis Sequence Match ( AT2G44530.1 )
(BLAST)

001: MASIVQPSPT FPALNLRRSS LIRPPSSVRF PLKCNAADPY KFDGGNSAGF HLLTGDTVPA SFSRTRLEDS IYQNTTRLRI FSGTANPILA QEISCYLGLD
101: LGKIKIKRFA DGEIYVQLQE SVRGCDVFLV QPTCPPANEN LMELLVMIDA CRRASAKTIT AVIPYFGYAR ADRKTQGRES IAAKLVANLI TQSGADRVLA
201: CDLHSGQSMG YFDIPVDHVY GQPVILDYLA SKAISSEDLV VVSPDVGGVA RARAFAKKLS DAPLAIVDKR RHGHNVAEVM NLIGDVKGKV AIMVDDMIDT
301: AGTISKGAAL LHQEGAREVY ACTTHAVFSP PAISRLSSGL FQEVIITNTI PLSEKNYFPQ LTVLSVANLL GETIWRVHDD CSGAIEPFST LGID

Arabidopsis Description

PRS5Ribose-phosphate pyrophosphokinase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64888]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.