Factsheet for Solyc10g024410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	91.72	78.93
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	85.52	74.7
PGSC0003DMT400056411	Potato	plastid	95.52	69.95
HORVU6Hr1G015080.5	Barley	mitochondrion	87.93	68.18
VIT_15s0021g00460.t01	Wine grape	plastid	94.14	67.74
KRH48933	Soybean	plastid	92.41	66.67
KRH66354	Soybean	nucleus	92.76	66.58
AT2G44530.1	Thale cress	plastid	88.62	65.23
Os02t0127700-02	Rice	plastid	88.62	64.9
Solyc08g077200.2.1	Tomato	plastid	88.62	64.74
CDY30476	Canola	plastid	89.31	64.59
CDY23440	Canola	plastid	85.17	64.32
EES06216	Sorghum	plastid	87.59	63.82
Zm00001d015115_P001	Maize	plastid	87.24	63.41
TraesCS6A01G088200.2	Wheat	nucleus	87.59	63.03
TraesCS6B01G110600.1	Wheat	plastid	87.59	62.87
TraesCSU01G018200.1	Wheat	plastid	87.24	62.78
Bra037645.1-P	Field mustard	plastid	89.31	62.56
Solyc06g061040.2.1	Tomato	plastid	81.03	58.31
Solyc07g056330.2.1	Tomato	cytosol, nucleus	22.76	20.62
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	22.41	20.19
Solyc04g039620.2.1	Tomato	plastid	17.93	16.05
Solyc04g039650.2.1	Tomato	plastid	3.45	12.66

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:50.2.7	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116
GO:GO:0009156	GO:GO:0009165	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0044249
UniProt:K4CZ60	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like	InterPro:PRibTrfase_dom	InterPro:PRib_PP_synth_CS
ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF86	InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase	SMART:SM01400
SUPFAM:SSF53271	EnsemblPlantsGene:Solyc10g024410.1	EnsemblPlants:Solyc10g024410.1.1	TIGRFAMs:TIGR01251	UniParc:UPI000276ABB4	:

Description

Ribose-phosphate pyrophosphokinase 5, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G44530) UniProtKB/Swiss-Prot;Acc:O64888]

Coordinates

chr10:-:14083898..14088169

Molecular Weight (calculated)

31384.8 Da

IEP (calculated)

5.148

GRAVY (calculated)

0.110

Length

290 amino acids

Sequence
(BLAST)

001: MIKRFADSEI YVQLQESVRG CDVYLVQPTC PPANENLMEL LIMIDACRRA SAKNITAVVP YFGYARADRK TQGRESIAAK LVANLITEAG ADRVLACDLH
101: SGQSMGYFDI PVDHVPGQPV ILDYLASKTI CSDDLVVVSP DVGGVARARA FAKKLSDAPL AIVDKRRHGH NVAEVMNLIG DVRGKVAVMV DDMIDTAGTI
201: AKGAALLHQE GAREVYACTT HAVFSPPAIE RLSSGLFQEV IITNTIPVAE QNYFPQLTIL SVANLLGETI WRVHDDCAGG FEPYSNLGID

Best Arabidopsis Sequence Match ( AT2G44530.1 )
(BLAST)

001: MASIVQPSPT FPALNLRRSS LIRPPSSVRF PLKCNAADPY KFDGGNSAGF HLLTGDTVPA SFSRTRLEDS IYQNTTRLRI FSGTANPILA QEISCYLGLD
101: LGKIKIKRFA DGEIYVQLQE SVRGCDVFLV QPTCPPANEN LMELLVMIDA CRRASAKTIT AVIPYFGYAR ADRKTQGRES IAAKLVANLI TQSGADRVLA
201: CDLHSGQSMG YFDIPVDHVY GQPVILDYLA SKAISSEDLV VVSPDVGGVA RARAFAKKLS DAPLAIVDKR RHGHNVAEVM NLIGDVKGKV AIMVDDMIDT
301: AGTISKGAAL LHQEGAREVY ACTTHAVFSP PAISRLSSGL FQEVIITNTI PLSEKNYFPQ LTVLSVANLL GETIWRVHDD CSGAIEPFST LGID

Arabidopsis Description

PRS5Ribose-phosphate pyrophosphokinase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64888]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.