CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03491	Canola	plastid	97.77	97.77
CDX78589	Canola	mitochondrion	0.96	1.33
CDY03490	Canola	mitochondrion	1.91	0.84
CDX76327	Canola	mitochondrion	1.91	0.84
CDX86848	Canola	mitochondrion	1.27	0.59
CDY53517	Canola	mitochondrion	1.27	0.59
CDY01289	Canola	cytosol	0.32	0.57
CDX93844	Canola	cytosol	0.32	0.41
CDY39283	Canola	plasma membrane, vacuole	0.32	0.28
CDX92751	Canola	cytosol	0.32	0.28
CDY42757	Canola	cytosol	0.32	0.28
CDY25732	Canola	plastid	0.32	0.18
CDY25875	Canola	plastid	0.32	0.13
CDY69326	Canola	cytosol	0.0	0.0
CDY11594	Canola	cytosol	0.0	0.0
CDY27532	Canola	cytosol, plastid	0.0	0.0
CDY32414	Canola	extracellular, plasma membrane	0.0	0.0
CDY32415	Canola	cytosol, plastid	0.0	0.0
CDY32868	Canola	cytosol	0.0	0.0
CDY37306	Canola	cytosol, plastid	0.0	0.0
CDY71921	Canola	mitochondrion	0.0	0.0
CDY40902	Canola	nucleus	0.0	0.0
CDY40903	Canola	cytosol	0.0	0.0
CDY70962	Canola	cytosol	0.0	0.0
CDY70105	Canola	cytosol	0.0	0.0
CDY52951	Canola	cytosol	0.0	0.0
CDY42585	Canola	cytosol	0.0	0.0
CDY64969	Canola	cytosol	0.0	0.0
CDY43527	Canola	cytosol	0.0	0.0
CDY43920	Canola	cytosol, plastid	0.0	0.0
CDY62124	Canola	cytosol	0.0	0.0
CDY57851	Canola	cytosol	0.0	0.0
CDY45937	Canola	cytosol	0.0	0.0
CDY46547	Canola	cytosol, plastid	0.0	0.0
CDY47150	Canola	cytosol	0.0	0.0
CDY50119	Canola	cytosol	0.0	0.0
CDY50304	Canola	cytosol	0.0	0.0
CDY54149	Canola	cytosol	0.0	0.0
CDX88578	Canola	cytosol	0.0	0.0
CDX68224	Canola	mitochondrion	0.0	0.0
CDX68588	Canola	cytosol	0.0	0.0
CDX69563	Canola	cytosol	0.0	0.0
CDX70576	Canola	cytosol	0.0	0.0
CDX73633	Canola	cytosol	0.0	0.0
CDX79332	Canola	cytosol	0.0	0.0
CDX82067	Canola	mitochondrion	0.0	0.0
CDX82209	Canola	plastid	0.0	0.0
CDX82210	Canola	plastid	0.0	0.0
CDX85586	Canola	cytosol	0.0	0.0
CDX87368	Canola	cytosol	0.0	0.0
CDX87830	Canola	cytosol	0.0	0.0
CDX88555	Canola	cytosol	0.0	0.0
CDY25260	Canola	cytosol	0.0	0.0
CDX91026	Canola	cytosol	0.0	0.0
CDX94250	Canola	cytosol	0.0	0.0
CDX95954	Canola	cytosol	0.0	0.0
CDX97641	Canola	cytosol	0.0	0.0
CDX98536	Canola	cytosol	0.0	0.0
CDY03750	Canola	cytosol	0.0	0.0
CDY05240	Canola	mitochondrion	0.0	0.0
CDY09438	Canola	cytosol	0.0	0.0
CDY09880	Canola	cytosol	0.0	0.0
CDY11103	Canola	mitochondrion	0.0	0.0
CDX67984	Canola	cytosol	0.0	0.0
CDY11913	Canola	cytosol	0.0	0.0
CDY24712	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDX76326	EnsemblPlantsGene:GSBRNA2T00126701001	GO:A0A078CGI8	ncoils:Coil	PANTHER:PTHR36383	ProteinID:CDX76326
ProteinID:CDX76326.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE1C90	MapMan:35.2	:

Description

BnaA08g10740D

Coordinates

chrLK031807:+:391664..393338

Molecular Weight (calculated)

34274.7 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.094

Length

314 amino acids

Sequence
(BLAST)

001: MQTLSPQSLR WKSNPLIVSE SYVFNPKALN FQLSSLSSPH RRTRNWRISS SSEENAANSS DGGDLKKSLS GIVGNQVEEL LSREENKSLL DGLEKASMRV
101: ETAKRELAEI ERQEFEAKLL QDYVDKLESR AAEIAECQQE IIAARTMVEE AERSLSLAET AATESSENGY SIDKDKERLE SAKAAAIAAA VGTVAEIPFA
201: LSQVSSIEQL VLPLGVAFAS CALFGVTFRY VIRRDLDDSH LKSGAVAAFG FVKGLGMLSR GPPLELSWES LFSHGIDGAV LVSQSVLIFA FASISLDFCF
301: KLKLLKPFPS SAQM

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.