CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90003
CDY08765
CDY12159
CDY15206
CDY32448
CDY37838
CDY45614
CDY52535
CDY52552
CDY55328

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01480.1	CDX90003	AT1G01050.1	21798944
AT4G01480.1	CDY15206	AT1G01050.1	21798944
AT4G01480.1	CDY32448	AT1G01050.1	21798944
AT4G01480.1	CDY55328	AT1G01050.1	21798944
AT4G01480.1	CDY12159	AT2G32840.1	21798944
AT4G01480.1	CDY52552	AT2G32840.1	21798944
AT4G01480.1	CDY08765	AT5G65683.1	21798944
AT4G01480.1	CDY37838	AT5G65683.1	21798944
AT4G01480.1	CDY45614	AT5G65683.1	21798944
AT4G01480.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037416.1-P	Field mustard	cytosol	99.53	99.53
CDY01933	Canola	cytosol	95.79	95.79
CDX97250	Canola	cytosol	95.79	95.79
CDY32448	Canola	cytosol	90.65	94.17
CDY15206	Canola	cytosol	91.59	93.78
CDY55328	Canola	cytosol	90.19	93.69
CDX90003	Canola	cytosol	92.52	93.4
KRH47754	Soybean	cytosol	87.38	88.21
AT4G01480.1	Thale cress	cytosol	88.32	87.5
Solyc08g083370.2.1	Tomato	cytosol	83.64	87.32
PGSC0003DMT400012843	Potato	extracellular	85.51	86.73
PGSC0003DMT400015012	Potato	cytosol	77.1	86.39
CDY27516	Canola	cytosol	86.92	86.11
CDY48009	Canola	cytosol	86.92	86.11
CDY69447	Canola	cytosol	31.78	86.08
Solyc12g055830.1.1	Tomato	extracellular	85.51	85.92
KRH68981	Soybean	cytosol	83.64	84.83
KRG97263	Soybean	cytosol	83.64	84.83
Solyc08g013680.2.1	Tomato	cytosol	43.93	84.68
PGSC0003DMT400031865	Potato	cytosol	80.84	81.6
VIT_02s0025g02980.t01	Wine grape	cytosol	80.84	80.84
CDX78192	Canola	cytosol	80.37	79.26
CDX73537	Canola	cytosol	80.37	79.26
KRH06335	Soybean	cytosol	80.84	77.58
KRG98973	Soybean	cytosol	68.69	75.0
CDY46306	Canola	cytosol	71.03	69.41
CDY64108	Canola	cytosol	70.56	68.95
CDY30321	Canola	cytosol	70.56	68.95
CDY25149	Canola	cytosol	71.03	65.24
KRG99305	Soybean	cytosol	60.28	64.18
KRH72403	Soybean	cytosol	40.19	63.7
KRG88877	Soybean	cytosol	34.11	63.48
CDY44812	Canola	cytosol	18.22	24.68
CDY71464	Canola	plastid	28.04	22.64
CDY21593	Canola	plastid	28.97	20.95
CDX69894	Canola	plastid	28.97	20.81
CDX81134	Canola	plastid	28.04	20.34
CDY56549	Canola	plastid	28.04	20.27
CDX85804	Canola	plastid	24.77	18.79
CDX81136	Canola	cytosol	6.54	18.42

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:3.90.80.10	MapMan:35.1	GO:A0A078F180	EnsemblPlants:CDY07141	ProteinID:CDY07141
ProteinID:CDY07141.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006796	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00123492001	InterPro:IPR036649	HAMAP:MF_00209
PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF37	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf
SUPFAM:SSF50324	UniParc:UPI000211E22D	:	:	:	:

Description

BnaCnng01560D

Coordinates

chrLK031975:-:464761..467009

Molecular Weight (calculated)

24585.6 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.421

Length

214 amino acids

Sequence
(BLAST)

001: MSEEVKENQS DKLQRTAPRL NERILSSLSR KSVAAHPWHD LEIGPGAPSI FNVVIEISKG SKVKYELDKK TGLIKVDRIL YSSVVYPHNY GFIPRTLCED
101: NDPLDVLVIM QEPVLPGCFL RARAIGLMPM IDQGEKDDKI IAVCVDDPEY KHYTDIKELP PHRLSEIRRF FEDYKKNENK EVAVNDFLPN GPAVEAIQYS
201: MDLYAEYILH TLRR

Best Arabidopsis Sequence Match ( AT1G01050.2 )
(BLAST)

001: MSEETKDNQR LQRPAPRLNE RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS SVVYPHNYGF VPRTLCEDND
101: PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD
201: LYAEYILHTL RR

Arabidopsis Description

PPA1Soluble inorganic pyrophosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.