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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P26260_001 Banana cytosol 56.33 48.9
CDY71464 Canola plastid 80.38 47.92
GSMUA_Achr6P30130_001 Banana cytosol 54.43 47.25
CDX81136 Canola cytosol 22.15 46.05
CDY21593 Canola plastid 81.65 43.58
CDX69894 Canola plastid 81.65 43.29
CDX81134 Canola plastid 79.75 42.71
CDY56549 Canola plastid 79.75 42.57
CDX85804 Canola plastid 72.15 40.43
PGSC0003DMT400068875 Potato cytosol 72.78 39.38
PGSC0003DMT400008028 Potato extracellular 70.89 38.62
KRH21683 Soybean nucleus 70.25 38.54
Solyc10g047950.1.1 Tomato plastid 71.52 38.44
KRH10663 Soybean nucleus 69.62 38.19
Solyc01g106430.2.1 Tomato plastid 69.62 37.93
HORVU6Hr1G080160.1 Barley plastid 65.82 36.24
EES05862 Sorghum plastid 65.82 36.11
TraesCS6B01G360300.1 Wheat plastid 65.19 35.89
TraesCS6A01G329500.1 Wheat golgi 65.19 35.89
TraesCS6D01G308400.1 Wheat plastid 65.19 35.89
Zm00001d018197_P001 Maize plastid 65.19 35.76
Os02t0768600-01 Rice plastid 65.82 35.37
VIT_03s0088g01290.t01 Wine grape plastid 32.91 34.67
VIT_18s0001g08170.t01 Wine grape cytosol 55.06 28.62
CDX90003 Canola cytosol 25.95 19.34
CDY01933 Canola cytosol 25.95 19.16
CDX97250 Canola cytosol 25.95 19.16
CDY15206 Canola cytosol 25.32 19.14
CDY69447 Canola cytosol 9.49 18.99
CDY55328 Canola cytosol 24.68 18.93
CDY32448 Canola cytosol 24.68 18.93
CDY07141 Canola cytosol 24.68 18.22
CDY48009 Canola cytosol 24.68 18.06
CDY27516 Canola cytosol 24.68 18.06
CDX73537 Canola cytosol 24.68 17.97
CDX78192 Canola cytosol 24.68 17.97
CDY64108 Canola cytosol 23.42 16.89
CDY46306 Canola cytosol 23.42 16.89
CDY30321 Canola cytosol 23.42 16.89
CDY25149 Canola cytosol 23.42 15.88
Protein Annotations
KEGG:00190+3.6.1.1Gene3D:3.90.80.10MapMan:35.1GO:A0A078I420UniProt:A0A078I420EnsemblPlants:CDY44812
ProteinID:CDY44812ProteinID:CDY44812.1GO:GO:0000287GO:GO:0003674GO:GO:0003824GO:GO:0004427
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006796
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00080821001InterPro:IPR036649
ScanProsite:PS00387PANTHER:PTHR10286PANTHER:PTHR10286:SF39InterPro:PyrophosphataseInterPro:Pyrophosphatase_sfSUPFAM:SSF50324
UniParc:UPI0004EE4D13SEG:seg::::
Description
BnaC02g00750DBnaC02g00750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I420]
Coordinates
chrLK032601:-:223784..224728
Molecular Weight (calculated)
17865.6 Da
IEP (calculated)
4.844
GRAVY (calculated)
-0.108
Length
158 amino acids
Sequence
(BLAST)
001: MLLISYSVSP WHDIPLTLGD GVFNFIVEIP KESKAKMETW EDPSQANAEV EGAFGDNDPV DVVEIGEAQR KIGEILKLIL SMMLMMLRSI SRVHYTAIRD
101: WFRDYKIPDG KPANRFGLGD KPVIQISLDY ALKIIHETNE SWAKLVKRSV DAGDLSLF
Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)
001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY
Arabidopsis Description
PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.