Factsheet for PGSC0003DMT400068875

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 8
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g047950.1.1	Tomato	plastid	94.52	93.88
GSMUA_Achr6P30130_001	Banana	cytosol	56.51	90.66
GSMUA_Achr9P26260_001	Banana	cytosol	56.16	90.11
PGSC0003DMT400008028	Potato	extracellular	83.9	84.48
CDY71464	Canola	plastid	73.97	81.51
KRH10663	Soybean	nucleus	76.03	77.08
KRH21683	Soybean	nucleus	75.68	76.74
Bra006029.1-P	Field mustard	plastid	77.05	76.01
CDX81134	Canola	plastid	76.71	75.93
CDY56549	Canola	plastid	76.71	75.68
CDX69894	Canola	plastid	77.05	75.5
Bra009396.1-P	Field mustard	plastid	77.05	75.5
CDY21593	Canola	plastid	76.37	75.34
CDX85804	Canola	plastid	71.23	73.76
CDY44812	Canola	cytosol	39.38	72.78
AT5G09650.1	Thale cress	mitochondrion	74.66	72.67
Zm00001d018197_P001	Maize	plastid	71.23	72.22
EES05862	Sorghum	plastid	70.89	71.88
TraesCS6D01G308400.1	Wheat	plastid	69.86	71.08
HORVU6Hr1G080160.1	Barley	plastid	69.52	70.73
TraesCS6A01G329500.1	Wheat	golgi	69.52	70.73
TraesCS6B01G360300.1	Wheat	plastid	69.52	70.73
CDX81136	Canola	cytosol	18.15	69.74
Os02t0768600-01	Rice	plastid	68.84	68.37
Bra028625.1-P	Field mustard	plastid	34.25	60.24
VIT_18s0001g08170.t01	Wine grape	cytosol	58.9	56.58
PGSC0003DMT400015012	Potato	cytosol	20.89	31.94
PGSC0003DMT400012843	Potato	extracellular	21.58	29.86
PGSC0003DMT400031865	Potato	cytosol	20.89	28.77
PGSC0003DMT400023069	Potato	cytosol	20.89	28.24
PGSC0003DMT400009045	Potato	cytosol	19.52	26.64

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:102588545	Gene3D:3.90.80.10	MapMan:50.3.6	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:IPR036649	UniProt:M1CJL8	PFAM:PF00719	EnsemblPlantsGene:PGSC0003DMG400026784	PGSC:PGSC0003DMG400026784	EnsemblPlants:PGSC0003DMT400068875
ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324
UniParc:UPI000294E0F5	RefSeq:XP_006363960.1	:	:	:	:

Description

Inorganic pyrophosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400026784]

Coordinates

chr10:-:31204939..31211655

Molecular Weight (calculated)

32487.6 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.400

Length

292 amino acids

Sequence
(BLAST)

001: MAAATVRVSA NNTITASLIS KGPLQKTSIF NLCFRNGGAS AQRRRHFSCS AIYNPQIQIK QHGQPETLDY RVFFAEDSGK KVSPWHDIPL HLGDGVFNFI
101: AEIPKESSAK MEVATDEQYT PIKQDTKKGK LRYYPYNIHW NYGLLPQTWE DPSLANAEVE GAFGDNDPVD VVEIGESRAK IGQVLKVKPL AALAMIDEGE
201: LDWKIVAISL DDPQASLVND IDDVEKHFPG TLTAIREWFR DYKIPDGKPA NKFGLGNKPA NKDYALKVIM ETNESWAKLV KRSIPAGDLS LV

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.