Factsheet for PGSC0003DMT400008028

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 7
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106430.2.1	Tomato	plastid	98.28	98.28
GSMUA_Achr9P26260_001	Banana	cytosol	56.9	90.66
GSMUA_Achr6P30130_001	Banana	cytosol	55.86	89.01
PGSC0003DMT400068875	Potato	cytosol	84.48	83.9
CDY71464	Canola	plastid	75.52	82.64
KRH21683	Soybean	nucleus	77.24	77.78
KRH10663	Soybean	nucleus	77.24	77.78
Bra006029.1-P	Field mustard	plastid	78.62	77.03
CDX81134	Canola	plastid	78.28	76.95
CDX69894	Canola	plastid	78.97	76.85
CDY56549	Canola	plastid	78.28	76.69
CDY21593	Canola	plastid	77.93	76.35
Bra009396.1-P	Field mustard	plastid	78.28	76.17
CDX85804	Canola	plastid	72.76	74.82
AT5G09650.1	Thale cress	mitochondrion	76.21	73.67
Zm00001d018197_P001	Maize	plastid	72.07	72.57
EES05862	Sorghum	plastid	72.07	72.57
CDY44812	Canola	cytosol	38.62	70.89
TraesCS6D01G308400.1	Wheat	plastid	69.31	70.03
Os02t0768600-01	Rice	plastid	70.69	69.73
HORVU6Hr1G080160.1	Barley	plastid	68.97	69.69
TraesCS6A01G329500.1	Wheat	golgi	68.97	69.69
TraesCS6B01G360300.1	Wheat	plastid	68.97	69.69
CDX81136	Canola	cytosol	17.93	68.42
Bra028625.1-P	Field mustard	plastid	35.52	62.05
VIT_18s0001g08170.t01	Wine grape	cytosol	60.69	57.89
PGSC0003DMT400015012	Potato	cytosol	20.69	31.41
PGSC0003DMT400012843	Potato	extracellular	21.38	29.38
PGSC0003DMT400031865	Potato	cytosol	20.69	28.3
PGSC0003DMT400023069	Potato	cytosol	20.34	27.31
PGSC0003DMT400009045	Potato	cytosol	19.66	26.64

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:102600433	Gene3D:3.90.80.10	MapMan:50.3.6	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:IPR036649	UniProt:M0ZTX6	PFAM:PF00719	EnsemblPlantsGene:PGSC0003DMG400003103	PGSC:PGSC0003DMG400003103	EnsemblPlants:PGSC0003DMT400008028
ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324
UniParc:UPI0002958CD9	RefSeq:XP_006361979.1	SEG:seg	:	:	:

Description

Inorganic pyrophosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400003103]

Coordinates

chr1:-:83041894..83046233

Molecular Weight (calculated)

32476.6 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.410

Length

290 amino acids

Sequence
(BLAST)

001: MAAARVMVST SNTLTASLLS KGPLRRPNNF SLCFRNGPVQ KRRLFTCSAI YNPQIQTIEE GQPETLDYRV FFADNSGKKI SPWHDIPLHL GDGVFNFVVE
101: IPKESSAKME VATDEQHTPI KQDTKKGKLR YYPYNIHWNY GLLPQTWEDP TFANTEVEGA FGDNDPVDVV EIGESRGKIG QVLKVKPLAA LAMIDEGELD
201: WKIVAISLDD PRASLVNDVD DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FALGNKPANK DYALKIITET NESWAKLVKR SIAAGELSLV

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.