CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21683	Soybean	nucleus	97.22	97.22
GSMUA_Achr9P26260_001	Banana	cytosol	56.94	90.11
GSMUA_Achr6P30130_001	Banana	cytosol	56.25	89.01
CDY71464	Canola	plastid	77.08	83.77
Bra006029.1-P	Field mustard	plastid	80.9	78.72
CDY56549	Canola	plastid	80.56	78.38
CDX81134	Canola	plastid	80.21	78.31
Solyc01g106430.2.1	Tomato	plastid	78.12	77.59
PGSC0003DMT400008028	Potato	extracellular	77.78	77.24
PGSC0003DMT400068875	Potato	cytosol	77.08	76.03
Bra009396.1-P	Field mustard	plastid	78.47	75.84
CDX69894	Canola	plastid	78.12	75.5
CDY21593	Canola	plastid	77.08	75.0
CDX85804	Canola	plastid	73.26	74.82
AT5G09650.1	Thale cress	mitochondrion	76.74	73.67
Solyc10g047950.1.1	Tomato	plastid	75.0	73.47
Zm00001d018197_P001	Maize	plastid	73.26	73.26
EES05862	Sorghum	plastid	72.92	72.92
TraesCS6D01G308400.1	Wheat	plastid	71.18	71.43
TraesCS6B01G360300.1	Wheat	plastid	70.83	71.08
TraesCS6A01G329500.1	Wheat	golgi	70.83	71.08
HORVU6Hr1G080160.1	Barley	plastid	70.49	70.73
CDX81136	Canola	cytosol	18.4	69.74
CDY44812	Canola	cytosol	38.19	69.62
VIT_03s0088g01290.t01	Wine grape	plastid	36.11	69.33
Os02t0768600-01	Rice	plastid	70.49	69.05
Bra028625.1-P	Field mustard	plastid	36.11	62.65
VIT_18s0001g08170.t01	Wine grape	cytosol	60.76	57.57
KRH32318	Soybean	cytosol	22.92	30.56
KRH19727	Soybean	cytosol	22.57	30.09
KRH28709	Soybean	nucleus	22.22	30.05
KRH47754	Soybean	cytosol	21.88	29.72
KRH76757	Soybean	cytosol	21.88	29.58
KRG97263	Soybean	cytosol	21.53	29.38
KRH68981	Soybean	cytosol	21.53	29.38
KRG98973	Soybean	cytosol	19.1	28.06
KRG95822	Soybean	cytosol	22.22	27.95
KRH06335	Soybean	cytosol	21.18	27.35
KRH67552	Soybean	cytosol	21.88	27.27
KRG88877	Soybean	cytosol	10.07	25.22
KRG99305	Soybean	cytosol	17.01	24.38
KRH72403	Soybean	cytosol	11.11	23.7

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:3.90.80.10	MapMan:50.3.6	EMBL:ACUP02009151	EnsemblPlantsGene:GLYMA_15G061300	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	UniProt:I1ME40	InterPro:IPR036649	EnsemblPlants:KRH10663	ProteinID:KRH10663	ProteinID:KRH10663.1
PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	MetaCyc:PWY-7805	MetaCyc:PWY-7807
InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324	UniParc:UPI000233B722	:	:

Description

hypothetical protein

Coordinates

chr15:-:4723231..4726710

Molecular Weight (calculated)

32356.5 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.432

Length

288 amino acids

Sequence
(BLAST)

001: MAATRAITIA SNSTCSLLAK KPFVGGTALS LNNLNFCRTR RSYTCRAIYN PQVVVKEEGQ PETLDYRVFF VDKSGKKVSP WHDIPLRLGD DIYNFIVEIP
101: KESSAKMEVA TDESFTPIKQ DTKKGKLRYY PYNIHWNYGL LPQTWEDPSF ANSEVEGALG DNDPVDVVEI GERQRKIGEV LKVKPLGALA MIDEGELDWK
201: IVAISLDDPK APFVNDVDDV EKHFPGTLTA IRDWFRDYKI PDGKPANKFG LGNKAADKDY ALKVIKETNE SWNKLIKRSI PAGELSLV

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.