Factsheet for VIT_03s0088g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10663	Soybean	nucleus	69.33	36.11
KRH21683	Soybean	nucleus	68.67	35.76
GSMUA_Achr9P26260_001	Banana	cytosol	42.0	34.62
CDY71464	Canola	plastid	60.0	33.96
GSMUA_Achr6P30130_001	Banana	cytosol	40.67	33.52
Bra006029.1-P	Field mustard	plastid	66.0	33.45
CDY56549	Canola	plastid	65.33	33.11
CDY44812	Canola	cytosol	34.67	32.91
CDX81134	Canola	plastid	64.0	32.54
Bra009396.1-P	Field mustard	plastid	64.0	32.21
CDX69894	Canola	plastid	64.0	32.21
CDY21593	Canola	plastid	62.67	31.76
AT5G09650.1	Thale cress	mitochondrion	62.67	31.33
Zm00001d018197_P001	Maize	plastid	58.0	30.21
EES05862	Sorghum	plastid	57.33	29.86
TraesCS6D01G308400.1	Wheat	plastid	56.67	29.62
Bra028625.1-P	Field mustard	plastid	32.67	29.52
HORVU6Hr1G080160.1	Barley	plastid	56.0	29.27
TraesCS6A01G329500.1	Wheat	golgi	56.0	29.27
TraesCS6B01G360300.1	Wheat	plastid	56.0	29.27
CDX85804	Canola	plastid	53.33	28.37
Os02t0768600-01	Rice	plastid	54.67	27.89
VIT_18s0001g08170.t01	Wine grape	cytosol	37.33	18.42
VIT_02s0025g02980.t01	Wine grape	cytosol	13.33	9.35
VIT_04s0023g02050.t01	Wine grape	cytosol	13.33	9.3
VIT_08s0040g02470.t01	Wine grape	cytosol	13.33	9.26
CDX81136	Canola	cytosol	0.67	1.32

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100253976	wikigene:100253976	Gene3D:3.90.80.10	MapMan:35.1	ProteinID:CCB49592
ProteinID:CCB49592.1	UniProt:F6HBJ7	EMBL:FN595512	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR036649
EntrezGene:LOC100253976	wikigene:LOC100253976	PFAM:PF00719	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	InterPro:Pyrophosphatase
InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324	UniParc:UPI0002108A40	ArrayExpress:VIT_03s0088g01290	EnsemblPlantsGene:VIT_03s0088g01290	EnsemblPlants:VIT_03s0088g01290.t01
RefSeq:XP_002270727	RefSeq:XP_002270727.2	:	:	:	:

Description

No Description!

Coordinates

chr3:+:9698489..9706945

Molecular Weight (calculated)

16780.5 Da

IEP (calculated)

10.424

GRAVY (calculated)

-0.076

Length

150 amino acids

Sequence
(BLAST)

001: MAAARLAVIA NPFLSLNRIS QVRSLRCNNG VSLSVSKRLF TCRALHNPQL HVKEQGQPET LDYRVFFLDS SGKTVIRLLY PCVFICLGTL TAIRDWFRDY
101: KIPDGKPANK FGLGNKAANK DYALKVINET NESWAKLVKR SIPAGELSLV

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.