Factsheet for VIT_04s0023g02050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009045	Potato	cytosol	86.51	86.92
KRH28709	Soybean	nucleus	85.12	85.92
KRH76757	Soybean	cytosol	83.72	84.51
KXG30923	Sorghum	cytosol	80.93	84.47
Zm00001d051564_P001	Maize	cytosol	73.49	82.29
VIT_08s0040g02470.t01	Wine grape	cytosol	80.93	80.56
Os02t0704900-02	Rice	plasma membrane, plastid	79.53	79.91
HORVU6Hr1G068760.1	Barley	cytosol	79.07	79.44
TraesCS6D01G252400.1	Wheat	cytosol	79.07	79.44
TraesCS6A01G272300.1	Wheat	cytosol	79.07	79.44
TraesCS6B01G299800.1	Wheat	cytosol	78.6	78.97
VIT_02s0025g02980.t01	Wine grape	cytosol	78.14	78.5
AT2G18230.1	Thale cress	cytosol	77.21	76.15
CDY30321	Canola	cytosol	77.21	75.8
CDY64108	Canola	cytosol	77.21	75.8
Bra037229.1-P	Field mustard	cytosol	77.21	75.8
CDY46306	Canola	cytosol	76.28	74.89
CDY25149	Canola	cytosol	76.28	70.39
Solyc02g085050.2.1	Tomato	cytosol	86.05	69.03
GSMUA_Achr5P23650_001	Banana	extracellular	82.33	58.8
Zm00001d017770_P001	Maize	mitochondrion	79.07	53.63
Bra039627.1-P	Field mustard	plastid	76.28	24.05
VIT_18s0001g08170.t01	Wine grape	cytosol	23.26	16.45
VIT_03s0088g01290.t01	Wine grape	plastid	9.3	13.33

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100254798	wikigene:100254798	Gene3D:3.90.80.10	MapMan:35.1	ProteinID:CBI17491
ProteinID:CBI17491.3	UniProt:D7SPB2	EMBL:FN594959	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR036649
EntrezGene:LOC100254798	wikigene:LOC100254798	HAMAP:MF_00209	PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286
PANTHER:PTHR10286:SF40	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324	TIGR:TC56801	UniParc:UPI0001BE0DC6
ArrayExpress:VIT_04s0023g02050	EnsemblPlantsGene:VIT_04s0023g02050	EnsemblPlants:VIT_04s0023g02050.t01	unigene:Vvi.11522	unigene:Vvi.7396	RefSeq:XP_002264695
RefSeq:XP_002264695.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18564627..18568264

Molecular Weight (calculated)

24350.2 Da

IEP (calculated)

5.850

GRAVY (calculated)

-0.304

Length

215 amino acids

Sequence
(BLAST)

001: MANHDGEISS KTSGFPHHVV LNERILSSMS RRSIAAHPWH DLEIGPGAPS VFNCVVEIGK GSKVKYELDK ASGLIKVDRV LYSSVVYPHN YGFIPRTICE
101: DSDPMDVLIL MQEPVLPGSF LRARAIGLMP MIDQGEKDDK IIAVCADDPE FRHYKDIKEI PPHRLAEIRR FFEDYKKNEN KEVNVNDFLP ADSAIEAIKY
201: SMDLYASYIV ESLRQ

Best Arabidopsis Sequence Match ( AT1G01050.2 )
(BLAST)

001: MSEETKDNQR LQRPAPRLNE RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS SVVYPHNYGF VPRTLCEDND
101: PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD
201: LYAEYILHTL RR

Arabidopsis Description

PPA1Soluble inorganic pyrophosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.