CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76757	Soybean	cytosol	98.12	98.12
PGSC0003DMT400009045	Potato	cytosol	85.92	85.51
VIT_04s0023g02050.t01	Wine grape	cytosol	85.92	85.12
Zm00001d051564_P001	Maize	cytosol	73.71	81.77
KXG30923	Sorghum	cytosol	78.87	81.55
KRH19727	Soybean	cytosol	81.69	80.56
Os02t0704900-02	Rice	plasma membrane, plastid	80.28	79.91
KRH32318	Soybean	cytosol	80.75	79.63
TraesCS6D01G252400.1	Wheat	cytosol	79.81	79.44
TraesCS6A01G272300.1	Wheat	cytosol	79.81	79.44
HORVU6Hr1G068760.1	Barley	cytosol	79.81	79.44
KRH47754	Soybean	cytosol	78.87	79.25
TraesCS6B01G299800.1	Wheat	cytosol	79.34	78.97
AT2G18230.1	Thale cress	cytosol	80.75	78.9
Bra037229.1-P	Field mustard	cytosol	80.28	78.08
CDY30321	Canola	cytosol	80.28	78.08
CDY46306	Canola	cytosol	80.28	78.08
CDY64108	Canola	cytosol	80.28	78.08
KRG97263	Soybean	cytosol	77.0	77.73
KRH68981	Soybean	cytosol	76.06	76.78
KRG95822	Soybean	cytosol	79.34	73.8
CDY25149	Canola	cytosol	80.28	73.39
KRH67552	Soybean	cytosol	79.34	73.16
KRG98973	Soybean	cytosol	65.73	71.43
KRH06335	Soybean	cytosol	74.18	70.85
Solyc02g085050.2.1	Tomato	cytosol	86.39	68.66
KRG88877	Soybean	cytosol	33.8	62.61
KRG99305	Soybean	cytosol	58.22	61.69
KRH72403	Soybean	cytosol	37.56	59.26
GSMUA_Achr5P23650_001	Banana	extracellular	80.28	56.81
Zm00001d017770_P001	Maize	mitochondrion	77.0	51.73
Bra039627.1-P	Field mustard	plastid	80.28	25.07
KRH10663	Soybean	nucleus	30.05	22.22
KRH21683	Soybean	nucleus	29.11	21.53

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100306258	Gene3D:3.90.80.10	MapMan:35.1	EMBL:ACUP02006761	EMBL:BT090283
UniProt:C6SYN5	EnsemblPlantsGene:GLYMA_11G070800	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006796
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR036649	EnsemblPlants:KRH28709
ProteinID:KRH28709	ProteinID:KRH28709.1	ProteinID:KRH28710.1	HAMAP:MF_00209	PFAM:PF00719	ScanProsite:PS00387
PANTHER:PTHR10286	PANTHER:PTHR10286:SF10	MetaCyc:PWY-7805	MetaCyc:PWY-7807	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf
SUPFAM:SSF50324	UniParc:UPI000189D8C9	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:5288501..5292009

Molecular Weight (calculated)

24220.0 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.318

Length

213 amino acids

Sequence
(BLAST)

001: MAHHEDSSAW NSSKPHPKLN ERILSSLSRR TVAAHPWHDL EIGPGAPAVF NCVVEIGKGS KVKYELDKTS GLIKVDRILY SSVVYPHNYG FIPRTICEDS
101: DPMDVLVLMQ EPVLPGSFLR ARAIGLMPMI DQGERDDKII AVCADDPEFR HYTDIKELPP HRLAEIRRFF EDYKKNENKI VDVEDFLPAE AAIDAIKYSM
201: DLYAAYIVES LRH

Best Arabidopsis Sequence Match ( AT2G18230.1 )
(BLAST)

001: MAEIKDEGSA KGYAFPLRNP NVTLNERNFA AFTHRSAAAH PWHDLEIGPE APTVFNCVVE ISKGGKVKYE LDKNSGLIKV DRVLYSSIVY PHNYGFIPRT
101: ICEDSDPMDV LVLMQEPVLT GSFLRARAIG LMPMIDQGEK DDKIIAVCAD DPEFRHYRDI KELPPHRLAE IRRFFEDYKK NENKKVDVEA FLPAQAAIDA
201: IKDSMDLYAA YIKAGLQR

Arabidopsis Description

PPA2PPa2 [Source:UniProtKB/TrEMBL;Acc:A0A178VY12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.