Factsheet for VIT_18s0001g08170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30130_001	Banana	cytosol	45.72	76.37
GSMUA_Achr9P26260_001	Banana	cytosol	44.08	73.63
CDX81136	Canola	cytosol	16.45	65.79
KRH10663	Soybean	nucleus	57.57	60.76
KRH21683	Soybean	nucleus	57.57	60.76
PGSC0003DMT400008028	Potato	extracellular	57.89	60.69
Solyc01g106430.2.1	Tomato	plastid	56.91	59.66
CDY71464	Canola	plastid	51.97	59.62
Solyc10g047950.1.1	Tomato	plastid	57.57	59.52
PGSC0003DMT400068875	Potato	cytosol	56.58	58.9
Zm00001d018197_P001	Maize	plastid	54.61	57.64
CDX69894	Canola	plastid	56.25	57.38
CDY21593	Canola	plastid	55.59	57.09
Bra009396.1-P	Field mustard	plastid	55.92	57.05
CDX81134	Canola	plastid	54.93	56.61
EES05862	Sorghum	plastid	53.62	56.6
Bra006029.1-P	Field mustard	plastid	54.61	56.08
CDY56549	Canola	plastid	54.61	56.08
AT5G09650.1	Thale cress	mitochondrion	55.26	56.0
TraesCS6A01G329500.1	Wheat	golgi	52.3	55.4
TraesCS6B01G360300.1	Wheat	plastid	52.3	55.4
TraesCS6D01G308400.1	Wheat	plastid	52.3	55.4
Os02t0768600-01	Rice	plastid	53.29	55.1
CDY44812	Canola	cytosol	28.62	55.06
HORVU6Hr1G080160.1	Barley	plastid	51.97	55.05
CDX85804	Canola	plastid	50.0	53.9
Bra028625.1-P	Field mustard	plastid	20.72	37.95
VIT_03s0088g01290.t01	Wine grape	plastid	18.42	37.33
VIT_08s0040g02470.t01	Wine grape	cytosol	18.09	25.46
VIT_02s0025g02980.t01	Wine grape	cytosol	16.78	23.83
VIT_04s0023g02050.t01	Wine grape	cytosol	16.45	23.26

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100259149	wikigene:100259149	Gene3D:3.90.80.10	MapMan:50.3.6	ProteinID:CCB45697
ProteinID:CCB45697.1	UniProt:F6GZL8	EMBL:FN595227	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR036649
EntrezGene:LOC100259149	wikigene:LOC100259149	PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39
InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324	UniParc:UPI000210952F	ArrayExpress:VIT_18s0001g08170	EnsemblPlantsGene:VIT_18s0001g08170
EnsemblPlants:VIT_18s0001g08170.t01	RefSeq:XP_003634425	RefSeq:XP_003634425.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:6644092..6650612

Molecular Weight (calculated)

33533.9 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.289

Length

304 amino acids

Sequence
(BLAST)

001: MYKRQTIKVL LLDCGIATGG STQIFQNGCC CESDGVAGAL YHANTRTSSF LLKPFSITHK AIRLNRNLNA APRRLFACRA QYEPEYQIQV EGEPGTVDSR
101: VSPWHDVPLS LGYETFHFIV EIPKESSAKM EVATDEPHTP IKQDTRRKTS YDINWNYGLL AQTWEDPSFA NSEVGGAFGD NDPVDVVEIG ERRGKTGGIL
201: KVKPLAALAM IDEGELEWKI VAISLDDPRA SLLNDVDDVE KHFPGTLTAI RDWFRDYKIP DGKPPNKFGL GNKAANKVAL TCSSWTLLKN SASLGLGLIL
301: MAGF

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.