Factsheet for Zm00001d018197_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
extracellular: 20408568
plastid: 22065420
extracellular: 22192489
plastid: 23198870
mitochondrion: 29575040

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05862	Sorghum	plastid	96.88	96.88
TraesCS6D01G308400.1	Wheat	plastid	88.89	89.2
GSMUA_Achr6P30130_001	Banana	cytosol	56.25	89.01
HORVU6Hr1G080160.1	Barley	plastid	88.19	88.5
TraesCS6B01G360300.1	Wheat	plastid	87.85	88.15
TraesCS6A01G329500.1	Wheat	golgi	87.85	88.15
GSMUA_Achr9P26260_001	Banana	cytosol	54.51	86.26
Os02t0768600-01	Rice	plastid	86.11	84.35
CDY71464	Canola	plastid	70.14	76.23
KRH10663	Soybean	nucleus	73.26	73.26
KRH21683	Soybean	nucleus	72.92	72.92
PGSC0003DMT400008028	Potato	extracellular	72.57	72.07
Solyc01g106430.2.1	Tomato	plastid	72.22	71.72
PGSC0003DMT400068875	Potato	cytosol	72.22	71.23
Solyc10g047950.1.1	Tomato	plastid	71.88	70.41
Bra006029.1-P	Field mustard	plastid	71.18	69.26
CDY56549	Canola	plastid	70.83	68.92
CDX81134	Canola	plastid	70.49	68.81
CDX69894	Canola	plastid	70.14	67.79
CDY21593	Canola	plastid	69.44	67.57
Bra009396.1-P	Field mustard	plastid	69.79	67.45
AT5G09650.1	Thale cress	mitochondrion	70.14	67.33
CDX85804	Canola	plastid	64.93	66.31
CDY44812	Canola	cytosol	35.76	65.19
CDX81136	Canola	cytosol	17.01	64.47
VIT_03s0088g01290.t01	Wine grape	plastid	30.21	58.0
VIT_18s0001g08170.t01	Wine grape	cytosol	57.64	54.61
Bra028625.1-P	Field mustard	plastid	28.47	49.4
Zm00001d051564_P001	Maize	cytosol	20.49	30.73
Zm00001d026680_P003	Maize	cytosol	21.18	28.5
Zm00001d035616_P001	Maize	cytosol	21.53	28.18
Zm00001d010171_P002	Maize	cytosol, extracellular	21.88	28.12
Zm00001d002889_P002	Maize	cytosol	21.18	24.11
Zm00001d017770_P001	Maize	mitochondrion	21.88	19.87

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:100272927	Gene3D:3.90.80.10	MapMan:50.3.6	ProteinID:AQK75226.1	UniProt:B4FRR1
EMBL:BT039799	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006796	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009941	GO:GO:0009987
GO:GO:0016787	GO:GO:0042742	GO:GO:0046686	InterPro:IPR036649	PFAM:PF00719	ScanProsite:PS00387
PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324	UniParc:UPI00017B77B6
EnsemblPlantsGene:Zm00001d018197	EnsemblPlants:Zm00001d018197_P001	EnsemblPlants:Zm00001d018197_T001	SEG:seg	:	:

Description

pyrophosphate-energized proton pump1Soluble inorganic pyrophosphatase 6 chloroplastic

Coordinates

chr5:+:216311489..216316556

Molecular Weight (calculated)

31752.7 Da

IEP (calculated)

5.863

GRAVY (calculated)

-0.416

Length

288 amino acids

Sequence
(BLAST)

001: MATAATASAT AATRFTLLAG AGLRSRITRL PTAVRFQRQR GLTTTALLKT ADLQPKEQGK PETLDYRVFL VDGGGRKVSP WHDVPLRAGD GVFHFVVEIP
101: KESSAKMEVA TDEAFTPIKQ DTKKGNLRYY PYNINWNYGL LPQTWEDPTS ANSEVEGAFG DNDPVDVVEI GERRANVGDV LKVKPLAALA MIDEGELDWK
201: IVAISLDDPK ASLVNDVDDV EKHFPGTLTA IRDWFRDYKI PDGKPANKFG LGNKPASKEY ALKVIQETNE SWEKLVKRNI PAGELSLA

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.