Factsheet for TraesCS6D01G308400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 16481623
plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G329500.1	Wheat	golgi	98.61	98.61
HORVU6Hr1G080160.1	Barley	plastid	98.61	98.61
TraesCS6B01G360300.1	Wheat	plastid	98.26	98.26
EES05862	Sorghum	plastid	90.94	90.62
Zm00001d018197_P001	Maize	plastid	89.2	88.89
GSMUA_Achr9P26260_001	Banana	cytosol	55.05	86.81
GSMUA_Achr6P30130_001	Banana	cytosol	54.7	86.26
Os02t0768600-01	Rice	plastid	84.32	82.31
CDY71464	Canola	plastid	70.38	76.23
KRH21683	Soybean	nucleus	71.43	71.18
KRH10663	Soybean	nucleus	71.43	71.18
PGSC0003DMT400068875	Potato	cytosol	71.08	69.86
PGSC0003DMT400008028	Potato	extracellular	70.03	69.31
Solyc01g106430.2.1	Tomato	plastid	70.03	69.31
Solyc10g047950.1.1	Tomato	plastid	70.73	69.05
Bra006029.1-P	Field mustard	plastid	71.08	68.92
CDY56549	Canola	plastid	70.73	68.58
CDX81134	Canola	plastid	70.38	68.47
CDX69894	Canola	plastid	70.38	67.79
CDY21593	Canola	plastid	69.69	67.57
Bra009396.1-P	Field mustard	plastid	70.03	67.45
AT5G09650.1	Thale cress	mitochondrion	68.64	65.67
CDX85804	Canola	plastid	64.46	65.6
CDY44812	Canola	cytosol	35.89	65.19
CDX81136	Canola	cytosol	16.38	61.84
VIT_03s0088g01290.t01	Wine grape	plastid	29.62	56.67
VIT_18s0001g08170.t01	Wine grape	cytosol	55.4	52.3
Bra028625.1-P	Field mustard	plastid	28.92	50.0
TraesCS3D01G539900.1	Wheat	cytosol	22.3	28.57
TraesCS2D01G587100.1	Wheat	cytosol	20.56	27.96
TraesCS1D01G344800.2	Wheat	cytosol	19.86	27.8
TraesCS1D01G040000.1	Wheat	cytosol	20.91	27.65
TraesCS1D01G273500.1	Wheat	cytosol	20.56	27.31
TraesCS6D01G252400.1	Wheat	cytosol	20.21	27.1
TraesCS3D01G540100.1	Wheat	cytosol, plastid	21.95	23.95

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:3.90.80.10	MapMan:50.3.6	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR036649
PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf
SUPFAM:SSF50324	EnsemblPlantsGene:TraesCS6D01G308400	EnsemblPlants:TraesCS6D01G308400.1	TIGR:cd00412	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:419269231..419275609

Molecular Weight (calculated)

31789.7 Da

IEP (calculated)

5.519

GRAVY (calculated)

-0.468

Length

287 amino acids

Sequence
(BLAST)

001: MATAVTASAT AATRFTRLAG IGLRRSSCRP RTAVRFQRPG LTTTALLRPT ELKPKDQGQP ETLDYRVFLV DGGGRKVSPW HDVPLRAGDG AFHFIVEIPK
101: ESSAKMEVAT DEAYTPIKQD TKKGNLRYYP YNINWNYGLL PQTWEDPTAA NADVEGALGD NDPVDVVEIG ERRANIGDVL RVKPLAALAM IDEGELDWKI
201: VAISLDDPKA SLVNDVDDVE EHFPGTLTAI RDWFRDYKIP DGKPANRFGL GNKPTSKEYA LKVIEETNES WEKLVKRKIP AGELSLA

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.