Factsheet for Solyc01g106430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008028	Potato	extracellular	98.28	98.28
GSMUA_Achr9P26260_001	Banana	cytosol	56.9	90.66
GSMUA_Achr6P30130_001	Banana	cytosol	55.17	87.91
CDY71464	Canola	plastid	74.48	81.51
Solyc10g047950.1.1	Tomato	plastid	82.41	81.29
KRH21683	Soybean	nucleus	77.59	78.12
KRH10663	Soybean	nucleus	77.59	78.12
Bra006029.1-P	Field mustard	plastid	78.28	76.69
CDX81134	Canola	plastid	77.93	76.61
CDX69894	Canola	plastid	78.62	76.51
CDY56549	Canola	plastid	77.93	76.35
CDY21593	Canola	plastid	77.59	76.01
Bra009396.1-P	Field mustard	plastid	77.93	75.84
CDX85804	Canola	plastid	72.41	74.47
AT5G09650.1	Thale cress	mitochondrion	75.86	73.33
Zm00001d018197_P001	Maize	plastid	71.72	72.22
EES05862	Sorghum	plastid	71.72	72.22
TraesCS6D01G308400.1	Wheat	plastid	69.31	70.03
HORVU6Hr1G080160.1	Barley	plastid	68.97	69.69
TraesCS6A01G329500.1	Wheat	golgi	68.97	69.69
TraesCS6B01G360300.1	Wheat	plastid	68.97	69.69
CDY44812	Canola	cytosol	37.93	69.62
Os02t0768600-01	Rice	plastid	70.0	69.05
CDX81136	Canola	cytosol	17.24	65.79
Bra028625.1-P	Field mustard	plastid	35.86	62.65
VIT_18s0001g08170.t01	Wine grape	cytosol	59.66	56.91
Solyc08g083370.2.1	Tomato	cytosol	21.03	29.76
Solyc12g055830.1.1	Tomato	extracellular	21.03	28.64
Solyc09g010380.2.1	Tomato	cytosol	20.69	27.78
Solyc08g013680.2.1	Tomato	cytosol	10.34	27.03
Solyc02g085050.2.1	Tomato	cytosol	20.0	21.64

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:3.90.80.10	MapMan:50.3.6	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR036649
UniProt:K4B2L1	PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF39	InterPro:Pyrophosphatase
InterPro:Pyrophosphatase_sf	SUPFAM:SSF50324	EnsemblPlantsGene:Solyc01g106430.2	EnsemblPlants:Solyc01g106430.2.1	UniParc:UPI00027676F6	SEG:seg

Description

No Description!

Coordinates

chr1:-:94327510..94331310

Molecular Weight (calculated)

32384.6 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.395

Length

290 amino acids

Sequence
(BLAST)

001: MAAARIMVSA SNTLTASLLS KGPLRRPNNF SLCFRNGPVQ KKRLFTCSAI YNPQIQTIEE GQPETLDYRV FFADNSGKKI SPWHDIPLHL GDGVFNFVVE
101: IPKESSAKME VATDEQHTPI KQDTKKGKLR YYPYNIHWNY GLLPQTWEDP TFANTEVEGA LGDNDPVDVV EIGDSRGKIG QVLKVKPLAA LAMIDEGELD
201: WKIVAISLDD PRASLVNDVD DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FALGNKPANK DYALKIITET NESWAKLVKR SIAAGELSLV

Best Arabidopsis Sequence Match ( AT5G09650.1 )
(BLAST)

001: MAATRVLTAA TAVTQTTSCF LAKQAFTLPA KKSCGGFGGL CFSRRALVLK SKRPFSCSAI YNPQVKVQEE GPAESLDYRV FFLDGSGKKV SPWHDIPLTL
101: GDGVFNFIVE IPKESKAKME VATDEDFTPI KQDTKKGKLR YYPYNINWNY GLLPQTWEDP SHANSEVEGC FGDNDPVDVV EIGETQRKIG DILKIKPLAA
201: LAMIDEGELD WKIVAISLDD PKAHLVNDVE DVEKHFPGTL TAIRDWFRDY KIPDGKPANR FGLGDKPANK DYALKIIQET NESWAKLVKR SVDAGDLSLY

Arabidopsis Description

PPA6Soluble inorganic pyrophosphatase 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.