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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 20496099
extracellular: 29876421
msms PMID: 20496099 doi
D Dahal, A Pich, HP Braun, K Wydra
Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400012843 Potato extracellular 97.65 98.58
Solyc08g083370.2.1 Tomato cytosol 88.73 92.2
Solyc08g013680.2.1 Tomato cytosol 47.42 90.99
CDY55328 Canola cytosol 84.51 87.38
Bra032616.1-P Field mustard cytosol 83.1 87.19
CDY32448 Canola cytosol 84.04 86.89
Bra037416.1-P Field mustard cytosol 86.39 85.98
CDY07141 Canola cytosol 85.92 85.51
Bra033292.1-P Field mustard cytosol 84.98 85.38
CDX90003 Canola cytosol 84.98 85.38
CDY15206 Canola cytosol 83.57 85.17
KRH47754 Soybean cytosol 84.51 84.91
AT1G01050.1 Thale cress cytosol 84.51 84.91
Os04t0687100-01 Rice cytosol, plasma membrane 84.51 84.51
GSMUA_Achr6P19560_001 Banana cytosol 84.04 84.43
GSMUA_Achr7P03170_001 Banana cytosol 83.57 83.96
TraesCS2D01G587100.1 Wheat cytosol 83.1 83.89
CDY01933 Canola cytosol 84.04 83.64
CDX97250 Canola cytosol 84.04 83.64
Bra008551.1-P Field mustard cytosol 84.04 83.64
EER94266 Sorghum cytosol 79.81 83.33
AT2G46860.1 Thale cress cytosol 84.51 83.33
Os10t0406100-01 Rice cytosol 79.81 83.33
KXG27493 Sorghum cytosol 83.57 83.18
Zm00001d026680_P003 Maize cytosol 83.57 83.18
GSMUA_Achr3P22500_001 Banana cytosol 82.63 83.02
Bra040479.1-P Field mustard cytosol 84.04 82.87
CDY27516 Canola cytosol 84.04 82.87
CDY48009 Canola cytosol 84.04 82.87
KRG97263 Soybean cytosol 81.69 82.46
KRH68981 Soybean cytosol 81.22 81.99
TraesCS2A01G576400.1 Wheat golgi 83.1 81.94
GSMUA_Achr8P07910_001 Banana cytosol 80.75 81.13
TraesCS2B01G611000.2 Wheat cytosol 82.16 80.65
AT4G01480.1 Thale cress cytosol 81.69 80.56
VIT_02s0025g02980.t01 Wine grape cytosol 80.75 80.37
Os01t0866500-01 Rice cytosol 79.81 80.19
Zm00001d010171_P002 Maize cytosol, extracellular 83.57 79.46
TraesCS1D01G273500.1 Wheat cytosol 80.28 79.17
TraesCS1B01G355800.1 Wheat cytosol 76.06 79.02
OQU87920 Sorghum cytosol 61.03 78.79
TraesCS1B01G283300.1 Wheat cytosol 79.81 78.7
TraesCS1A01G273500.1 Wheat cytosol 79.81 78.7
TraesCS1D01G344800.2 Wheat cytosol 75.59 78.54
TraesCS1A01G342700.1 Wheat cytosol 75.59 78.54
Os05t0438500-01 Rice cytosol 82.16 78.12
EES18298 Sorghum cytosol 83.57 77.73
Solyc09g010380.2.1 Tomato cytosol 78.4 77.31
KRH06335 Soybean cytosol 78.87 75.34
KRG98973 Soybean cytosol 69.01 75.0
TraesCS3B01G077900.2 Wheat plastid 83.1 74.06
HORVU1Hr1G075660.1 Barley cytosol 77.46 72.69
Zm00001d002889_P002 Maize cytosol 83.1 69.96
HORVU1Hr1G075110.1 Barley plastid 75.59 69.4
Solyc02g085050.2.1 Tomato cytosol 81.22 64.55
KRG88877 Soybean cytosol 34.74 64.35
KRG99305 Soybean cytosol 60.09 63.68
Os01t0322300-00 Rice cytosol 22.07 63.51
KRH72403 Soybean cytosol 39.91 62.96
GSMUA_Achr5P26130_001 Banana plastid 81.69 59.79
HORVU6Hr1G058900.2 Barley cytosol 38.97 46.11
HORVU2Hr1G065020.1 Barley cytosol 25.82 39.86
Solyc01g106430.2.1 Tomato plastid 28.64 21.03
Solyc10g047950.1.1 Tomato plastid 28.64 20.75
Protein Annotations
KEGG:00190+3.6.1.1Gene3D:3.90.80.10MapMan:35.1GO:GO:0000287GO:GO:0003674GO:GO:0003824
GO:GO:0004427GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006796GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787InterPro:IPR036649
UniProt:K4DFR4HAMAP:MF_00209PFAM:PF00719ScanProsite:PS00387PANTHER:PTHR10286PANTHER:PTHR10286:SF10
InterPro:PyrophosphataseInterPro:Pyrophosphatase_sfSUPFAM:SSF50324EnsemblPlantsGene:Solyc12g055830.1EnsemblPlants:Solyc12g055830.1.1UniParc:UPI0002769D1A
Description
No Description!
Coordinates
chr12:-:61826984..61829359
Molecular Weight (calculated)
24366.2 Da
IEP (calculated)
5.164
GRAVY (calculated)
-0.437
Length
213 amino acids
Sequence
(BLAST)
001: MSNEDGGDDL SPQRRAPRLN ERILSSISRR SVAAHPWHDL EIGPEAPSVF NVVIEISKGS KVKYELDKKT GLIKVDRILY SSVVYPQNYG FIPRTLCEDN
101: DPMDVLVLMQ EPVLPGCFLR ARAIGLMPMI DQGEKDDKII AVCADDPEYR HYTDIKQLPP HRLAEIRRFF EDYKKNENKD VAVDDFLPPS TAVDAIQYSM
201: DLYAEYILHS LRK
Best Arabidopsis Sequence Match ( AT1G01050.2 )
(BLAST)
001: MSEETKDNQR LQRPAPRLNE RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS SVVYPHNYGF VPRTLCEDND
101: PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD
201: LYAEYILHTL RR
Arabidopsis Description
PPA1Soluble inorganic pyrophosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V56]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.