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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • cytosol 3
  • mitochondrion 2
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytoskeleton, cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 extracellular: 28248230
msms PMID: 28248230 doi
E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400012843
PGSC0003DMT400015012
PGSC0003DMT400016192
PGSC0003DMT400031865
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01480.1 PGSC0003DMT400012843 AT1G01050.1 21798944
AT4G01480.1 PGSC0003DMT400015012 AT1G01050.1 21798944
AT4G01480.1 PGSC0003DMT400031865 AT1G01050.1 21798944
AT4G01480.1 PGSC0003DMT400016192 AT2G32840.1 21798944
AT4G01480.1 PGSC0003DMT400078676 AT5G65683.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g055830.1.1 Tomato extracellular 98.58 97.65
PGSC0003DMT400015012 Potato cytosol 82.46 91.1
Bra032616.1-P Field mustard cytosol 83.89 87.19
CDY55328 Canola cytosol 84.83 86.89
CDY32448 Canola cytosol 84.83 86.89
Bra037416.1-P Field mustard cytosol 87.2 85.98
CDY07141 Canola cytosol 86.73 85.51
AT1G01050.1 Thale cress cytosol 85.78 85.38
PGSC0003DMT400031865 Potato cytosol 85.78 85.38
CDY15206 Canola cytosol 84.36 85.17
KRH47754 Soybean cytosol 85.31 84.91
GSMUA_Achr6P19560_001 Banana cytosol 85.31 84.91
CDX90003 Canola cytosol 85.31 84.91
Bra033292.1-P Field mustard cytosol 85.31 84.91
GSMUA_Achr7P03170_001 Banana cytosol 84.36 83.96
AT2G46860.1 Thale cress cytosol 85.78 83.8
CDY01933 Canola cytosol 84.83 83.64
CDX97250 Canola cytosol 84.83 83.64
Bra008551.1-P Field mustard cytosol 84.83 83.64
Os04t0687100-01 Rice cytosol, plasma membrane 83.89 83.1
GSMUA_Achr3P22500_001 Banana cytosol 83.41 83.02
TraesCS2D01G587100.1 Wheat cytosol 82.94 82.94
CDY27516 Canola cytosol 84.83 82.87
CDY48009 Canola cytosol 84.83 82.87
Bra040479.1-P Field mustard cytosol 84.83 82.87
EER94266 Sorghum cytosol 80.09 82.84
Os10t0406100-01 Rice cytosol 80.09 82.84
Zm00001d026680_P003 Maize cytosol 83.41 82.24
KRG97263 Soybean cytosol 81.99 81.99
KXG27493 Sorghum cytosol 82.94 81.78
KRH68981 Soybean cytosol 81.52 81.52
TraesCS2A01G576400.1 Wheat golgi 82.94 81.02
VIT_02s0025g02980.t01 Wine grape cytosol 81.99 80.84
GSMUA_Achr8P07910_001 Banana cytosol 81.04 80.66
AT4G01480.1 Thale cress cytosol 82.46 80.56
PGSC0003DMT400009045 Potato cytosol 81.04 79.91
TraesCS2B01G611000.2 Wheat cytosol 81.99 79.72
Zm00001d010171_P002 Maize cytosol, extracellular 84.36 79.46
TraesCS1D01G273500.1 Wheat cytosol 81.04 79.17
Os01t0866500-01 Rice cytosol 79.15 78.77
TraesCS1A01G273500.1 Wheat cytosol 80.57 78.7
TraesCS1B01G283300.1 Wheat cytosol 80.57 78.7
TraesCS1B01G355800.1 Wheat cytosol 76.3 78.54
Os05t0438500-01 Rice cytosol 82.94 78.12
TraesCS1A01G342700.1 Wheat cytosol 75.83 78.05
TraesCS1D01G344800.2 Wheat cytosol 75.83 78.05
EES18298 Sorghum cytosol 84.36 77.73
OQU87920 Sorghum cytosol 60.66 77.58
PGSC0003DMT400023069 Potato cytosol 79.15 77.31
KRH06335 Soybean cytosol 79.15 74.89
KRG98973 Soybean cytosol 69.19 74.49
TraesCS3B01G077900.2 Wheat plastid 82.94 73.22
HORVU1Hr1G075660.1 Barley cytosol 77.73 72.25
Zm00001d002889_P002 Maize cytosol 82.94 69.17
HORVU1Hr1G075110.1 Barley plastid 75.83 68.97
KRG88877 Soybean cytosol 35.07 64.35
KRG99305 Soybean cytosol 60.66 63.68
KRH72403 Soybean cytosol 40.28 62.96
Os01t0322300-00 Rice cytosol 21.33 60.81
GSMUA_Achr5P26130_001 Banana plastid 81.52 59.11
HORVU6Hr1G058900.2 Barley cytosol 39.34 46.11
HORVU2Hr1G065020.1 Barley cytosol 25.59 39.13
PGSC0003DMT400068875 Potato cytosol 29.86 21.58
PGSC0003DMT400008028 Potato extracellular 29.38 21.38
Protein Annotations
KEGG:00190+3.6.1.1EntrezGene:102584131Gene3D:3.90.80.10MapMan:35.1ProteinID:ABK76339ProteinID:ABK76339.1
ProteinID:CAA85362ProteinID:CAA85362.1EMBL:EF091820GO:GO:0000287GO:GO:0003674GO:GO:0003824
GO:GO:0004427GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006796GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0046872
GO:GO:0071344InterPro:IPR036649UniProt:M1A1V7HAMAP:MF_00209PFAM:PF00719EnsemblPlantsGene:PGSC0003DMG400004999
PGSC:PGSC0003DMG400004999EnsemblPlants:PGSC0003DMT400012843ScanProsite:PS00387PANTHER:PTHR10286PANTHER:PTHR10286:SF10InterPro:Pyrophosphatase
InterPro:Pyrophosphatase_sfSUPFAM:SSF50324UniParc:UPI000294AE7DRefSeq:XP_006360727.1EMBL:Z36894:
Description
Soluble inorganic pyrophosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400004999]
Coordinates
chr12:-:53433711..53437384
Molecular Weight (calculated)
24236.1 Da
IEP (calculated)
5.685
GRAVY (calculated)
-0.437
Length
211 amino acids
Sequence
(BLAST)
001: MSNENDDLSP QRRAPRLNER ILSSISRRSV AAHPWHDLEI GPEAPSVFNV VIEISKGSKV KYELDKKTGL IKVDRILYSS VVYPQNYGFI PRTLCEDNDP
101: MDVLVLMQEP VLPGCFLRAR AIGLMPMIDQ GEKDDKIIAV CADDPEYRHY TDIKQLPPHR LAEIRRFFED YKKNENKDVA VDDFLPPSSA VNAIQYSMDL
201: YAEYILHSLR K
Best Arabidopsis Sequence Match ( AT1G01050.2 )
(BLAST)
001: MSEETKDNQR LQRPAPRLNE RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS SVVYPHNYGF VPRTLCEDND
101: PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD
201: LYAEYILHTL RR
Arabidopsis Description
PPA1Soluble inorganic pyrophosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V56]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.