Factsheet for PGSC0003DMT400031865

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012843
PGSC0003DMT400015012
PGSC0003DMT400016192
PGSC0003DMT400031865
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01480.1	PGSC0003DMT400012843	AT1G01050.1	21798944
AT4G01480.1	PGSC0003DMT400015012	AT1G01050.1	21798944
AT4G01480.1	PGSC0003DMT400031865	AT1G01050.1	21798944
AT4G01480.1	PGSC0003DMT400016192	AT2G32840.1	21798944
AT4G01480.1	PGSC0003DMT400078676	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083370.2.1	Tomato	cytosol	92.45	95.61
PGSC0003DMT400015012	Potato	cytosol	83.96	93.19
PGSC0003DMT400012843	Potato	extracellular	85.38	85.78
Bra032616.1-P	Field mustard	cytosol	79.72	83.25
CDY55328	Canola	cytosol	80.66	83.01
CDY32448	Canola	cytosol	80.66	83.01
KRH47754	Soybean	cytosol	82.08	82.08
GSMUA_Achr3P22500_001	Banana	cytosol	81.6	81.6
Bra037416.1-P	Field mustard	cytosol	82.08	81.31
CDY15206	Canola	cytosol	79.72	80.86
CDY07141	Canola	cytosol	81.6	80.84
AT1G01050.1	Thale cress	cytosol	80.66	80.66
CDX90003	Canola	cytosol	80.66	80.66
GSMUA_Achr6P19560_001	Banana	cytosol	80.66	80.66
Bra033292.1-P	Field mustard	cytosol	80.66	80.66
KRG97263	Soybean	cytosol	80.19	80.57
GSMUA_Achr7P03170_001	Banana	cytosol	80.19	80.19
TraesCS2D01G587100.1	Wheat	cytosol	79.72	80.09
Os04t0687100-01	Rice	cytosol, plasma membrane	80.19	79.81
GSMUA_Achr8P07910_001	Banana	cytosol	79.72	79.72
CDY48009	Canola	cytosol	81.13	79.63
CDY27516	Canola	cytosol	81.13	79.63
Bra040479.1-P	Field mustard	cytosol	81.13	79.63
AT2G46860.1	Thale cress	cytosol	81.13	79.63
KRH68981	Soybean	cytosol	79.25	79.62
CDY01933	Canola	cytosol	80.19	79.44
CDX97250	Canola	cytosol	80.19	79.44
Bra008551.1-P	Field mustard	cytosol	80.19	79.44
EER94266	Sorghum	cytosol	76.42	79.41
Os10t0406100-01	Rice	cytosol	76.42	79.41
Zm00001d026680_P003	Maize	cytosol	79.72	78.97
KXG27493	Sorghum	cytosol	79.25	78.5
TraesCS2A01G576400.1	Wheat	golgi	79.72	78.24
Os01t0866500-01	Rice	cytosol	77.36	77.36
AT4G01480.1	Thale cress	cytosol	78.77	77.31
TraesCS2B01G611000.2	Wheat	cytosol	78.77	76.96
Zm00001d010171_P002	Maize	cytosol, extracellular	81.13	76.79
VIT_02s0025g02980.t01	Wine grape	cytosol	76.89	76.17
KRG98973	Soybean	cytosol	70.28	76.02
EES18298	Sorghum	cytosol	81.6	75.55
OQU87920	Sorghum	cytosol	58.49	75.15
Os05t0438500-01	Rice	cytosol	79.25	75.0
TraesCS1B01G355800.1	Wheat	cytosol	72.17	74.63
TraesCS1D01G273500.1	Wheat	cytosol	75.94	74.54
TraesCS1B01G283300.1	Wheat	cytosol	75.94	74.54
TraesCS1D01G344800.2	Wheat	cytosol	71.7	74.15
PGSC0003DMT400023069	Potato	cytosol	75.47	74.07
TraesCS1A01G273500.1	Wheat	cytosol	75.47	74.07
TraesCS1A01G342700.1	Wheat	cytosol	71.23	73.66
PGSC0003DMT400009045	Potato	cytosol	73.58	72.9
KRH06335	Soybean	cytosol	75.47	71.75
TraesCS3B01G077900.2	Wheat	plastid	79.72	70.71
HORVU1Hr1G075660.1	Barley	cytosol	73.58	68.72
HORVU1Hr1G075110.1	Barley	plastid	74.53	68.1
Zm00001d002889_P002	Maize	cytosol	79.25	66.4
KRG88877	Soybean	cytosol	35.38	65.22
KRG99305	Soybean	cytosol	60.85	64.18
KRH72403	Soybean	cytosol	40.09	62.96
GSMUA_Achr5P26130_001	Banana	plastid	79.72	58.08
Os01t0322300-00	Rice	cytosol	19.81	56.76
HORVU6Hr1G058900.2	Barley	cytosol	38.21	45.0
HORVU2Hr1G065020.1	Barley	cytosol	25.47	39.13
PGSC0003DMT400068875	Potato	cytosol	28.77	20.89
PGSC0003DMT400008028	Potato	extracellular	28.3	20.69

Protein Annotations

KEGG:00190+3.6.1.1	EntrezGene:102581709	Gene3D:3.90.80.10	MapMan:35.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004427	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:IPR036649	UniProt:M1AWD7	HAMAP:MF_00209	PFAM:PF00719	EnsemblPlantsGene:PGSC0003DMG400012223	PGSC:PGSC0003DMG400012223
EnsemblPlants:PGSC0003DMT400031865	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF10	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf
SUPFAM:SSF50324	UniParc:UPI000296B01D	:	:	:	:

Description

Soluble inorganic pyrophosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400012223]

Coordinates

chr8:+:56807414..56809327

Molecular Weight (calculated)

24426.5 Da

IEP (calculated)

5.345

GRAVY (calculated)

-0.227

Length

212 amino acids

Sequence
(BLAST)

001: MSDEQRHAPR LNERILSSLS RRSVAAHPWH DLEIGPEAPN VFNVVIEISK GSKVKYELDK KTGLIKVDRV LYSSMVYPQN YGFIPRTLCE DNDPMDVLVL
101: MQEPVLPGCF LRARAIGLMP MIDQGEKDDK IIAVCADDPE YRHYTDINQL APHRLAEIRR FFEDYKKLEN KEVAVNEFLP PSTAVQAIQY SMYFLCWINC
201: ECIHTLVDNI VI

Best Arabidopsis Sequence Match ( AT1G01050.1 )
(BLAST)

001: MSEETKDNQR LQRPAPRLNE RILSSLSRRS VAAHPWHDLE IGPGAPQIFN VVVEITKGSK VKYELDKKTG LIKVDRILYS SVVYPHNYGF VPRTLCEDND
101: PIDVLVIMQE PVLPGCFLRA RAIGLMPMID QGEKDDKIIA VCVDDPEYKH YTDIKELPPH RLSEIRRFFE DYKKNENKEV AVNDFLPSES AVEAIQYSMD
201: LYAEYILHTL RR

Arabidopsis Description

PPA1Soluble inorganic pyrophosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93V56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.