CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90003
CDY08765
CDY12159
CDY15206
CDY32448
CDY37838
CDY45614
CDY52535
CDY52552
CDY55328

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01480.1	CDX90003	AT1G01050.1	21798944
AT4G01480.1	CDY15206	AT1G01050.1	21798944
AT4G01480.1	CDY32448	AT1G01050.1	21798944
AT4G01480.1	CDY55328	AT1G01050.1	21798944
AT4G01480.1	CDY12159	AT2G32840.1	21798944
AT4G01480.1	CDY52552	AT2G32840.1	21798944
AT4G01480.1	CDY08765	AT5G65683.1	21798944
AT4G01480.1	CDY37838	AT5G65683.1	21798944
AT4G01480.1	CDY45614	AT5G65683.1	21798944
AT4G01480.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008551.1-P	Field mustard	cytosol	100.0	100.0
CDX97250	Canola	cytosol	100.0	100.0
CDY07141	Canola	cytosol	95.79	95.79
CDY32448	Canola	cytosol	90.19	93.69
CDY15206	Canola	cytosol	91.12	93.3
CDY55328	Canola	cytosol	89.72	93.2
CDX90003	Canola	cytosol	92.06	92.92
AT4G01480.1	Thale cress	cytosol	89.72	88.89
KRH47754	Soybean	cytosol	87.85	88.68
PGSC0003DMT400015012	Potato	cytosol	76.64	85.86
Solyc08g083370.2.1	Tomato	cytosol	82.24	85.85
KRH68981	Soybean	cytosol	84.58	85.78
CDY48009	Canola	cytosol	86.45	85.65
CDY27516	Canola	cytosol	86.45	85.65
KRG97263	Soybean	cytosol	83.64	84.83
PGSC0003DMT400012843	Potato	extracellular	83.64	84.83
Solyc08g013680.2.1	Tomato	cytosol	43.93	84.68
Solyc12g055830.1.1	Tomato	extracellular	83.64	84.04
VIT_02s0025g02980.t01	Wine grape	cytosol	81.31	81.31
PGSC0003DMT400031865	Potato	cytosol	79.44	80.19
CDX73537	Canola	cytosol	81.31	80.18
CDX78192	Canola	cytosol	81.31	80.18
CDY69447	Canola	cytosol	29.44	79.75
KRH06335	Soybean	cytosol	81.31	78.03
KRG98973	Soybean	cytosol	70.09	76.53
CDY46306	Canola	cytosol	71.96	70.32
CDY64108	Canola	cytosol	71.5	69.86
CDY30321	Canola	cytosol	71.5	69.86
CDY25149	Canola	cytosol	71.96	66.09
KRG88877	Soybean	cytosol	35.05	65.22
KRG99305	Soybean	cytosol	60.75	64.68
KRH72403	Soybean	cytosol	40.19	63.7
CDY44812	Canola	cytosol	19.16	25.95
CDY71464	Canola	plastid	28.97	23.4
CDY21593	Canola	plastid	29.91	21.62
CDX69894	Canola	plastid	29.91	21.48
CDX81134	Canola	plastid	28.97	21.02
CDY56549	Canola	plastid	28.97	20.95
CDX85804	Canola	plastid	25.7	19.5
CDX81136	Canola	cytosol	6.54	18.42

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:3.90.80.10	MapMan:35.1	GO:A0A078EQX0	EnsemblPlants:CDY01933	ProteinID:CDY01933
ProteinID:CDY01933.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004427	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006796	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00113190001	InterPro:IPR036649	HAMAP:MF_00209
PFAM:PF00719	ScanProsite:PS00387	PANTHER:PTHR10286	PANTHER:PTHR10286:SF37	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf
SUPFAM:SSF50324	UniParc:UPI0001BA8ECB	:	:	:	:

Description

BnaC02g27940D

Coordinates

chrLK031930:-:418905..420809

Molecular Weight (calculated)

24537.6 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.398

Length

214 amino acids

Sequence
(BLAST)

001: MSEEVKENQS GKLQKPTPRL NERILSSLSK RSVAAHPWHD LEIGPGAPVI FNVVVEISKG SKVKYELDKK TGLIKVDRIL YSSVVYPHNY GFIPRTLCED
101: NDPLDVLVIM QEPVLPGCFL RARAIGLMPM IDQGEKDDKI IAVCVDDPEY KHYTDIKELP PHRLTEIRRF FEDYKKNENK EVAVNDFLPN GPAVEAIQYS
201: MDLYAEYILH TLRR

Best Arabidopsis Sequence Match ( AT4G01480.1 )
(BLAST)

001: MNGEEVKTSQ PQKKLQNPTP RLNERILSSL SKRSVAAHPW HDLEIGPGAP VIFNVVIEIS KGSKVKYELD KKTGLIKVDR ILYSSVVYPH NYGFVPRTLC
101: EDNDPIDVLV IMQEPVLPGC FLRARAIGLM PMIDQGEKDD KIIAVCVDDP EYKHITNINE LPPHRLSEIR RFFEDYKKNE NKEVAVNDFL QPGPAIEAIQ
201: YSMDLYAEYI LHTLRR

Arabidopsis Description

PPA5PPa5 [Source:UniProtKB/TrEMBL;Acc:A0A178V127]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.