Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12159 | Canola | nucleus, plastid | 77.21 | 76.43 |
| AT2G32840.1 | Thale cress | nucleus, plastid | 52.38 | 45.7 |
| VIT_13s0156g00270.t01 | Wine grape | cytosol | 18.37 | 42.52 |
| CDY18271 | Canola | plastid | 42.52 | 42.09 |
| CDX89775 | Canola | plastid | 45.24 | 39.35 |
| GSMUA_Achr7P11350_001 | Banana | endoplasmic reticulum, extracellular | 22.79 | 38.73 |
| KRH43426 | Soybean | cytosol | 30.95 | 33.58 |
| GSMUA_Achr6P06320_001 | Banana | nucleus | 11.9 | 32.71 |
| KRH13875 | Soybean | cytosol, nucleus, plastid | 30.61 | 31.25 |
| Solyc01g073920.2.1 | Tomato | cytosol, plastid | 32.65 | 28.07 |
| EER92590 | Sorghum | plastid | 23.47 | 22.33 |
| TraesCS4A01G076800.1 | Wheat | plastid | 27.21 | 21.28 |
| TraesCS4D01G234100.1 | Wheat | plastid | 26.87 | 20.95 |
| TraesCS4B01G232900.1 | Wheat | plastid | 25.85 | 20.05 |
| HORVU4Hr1G064990.1 | Barley | plastid | 24.83 | 18.67 |
| Zm00001d047985_P002 | Maize | plastid | 22.79 | 18.36 |
| PGSC0003DMT400016192 | Potato | nucleus, plastid | 17.35 | 17.83 |
| Os03t0234600-00 | Rice | plastid | 15.99 | 17.74 |
Protein Annotations
| EnsemblPlants:CDY52552 | EnsemblPlantsGene:GSBRNA2T00007255001 | GO:A0A078IRG4 | GO:GO:0005575 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0017053 | InterPro:LIN37 | ncoils:Coil | PANTHER:PTHR37173 | PFAM:PF15306 |
| ProteinID:CDY52552 | ProteinID:CDY52552.1 | SEG:seg | UniParc:UPI0004EE17B3 | UniProt:A0A078IRG4 | MapMan:35.2 |
Description
BnaA05g35110DBnaA05g35110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRG4]
Coordinates
chrLK033102:+:73893..75742
Molecular Weight (calculated)
32341.6 Da
IEP (calculated)
10.392
GRAVY (calculated)
-0.668
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPDPNASV SLAAASETPM TQPSTVKTPS PQPPYRAIIA PLHRQPQQSI HPHPFPVRRS NPVSGSPLQD PSALVYPGRG LPTRPGRQSP STVADPSGGY
101: PTLPVYAYQN GQSLDPMSRF MIQPASHLGS GHLKGVPHFL QPRVAHPPST SILDNGGRKN ARSRNDVLVL IRKRKVRITE GASLYSLCRS WLRNGAHEGL
201: QKQQSDTTVT CLPKPLPASD VVETSLPKDS VEEPNCVEED KEDEESVKQL SDADLLKRHV DRAKKVRARL REERLKRIAR YKARLALLLP PFGE
101: PTLPVYAYQN GQSLDPMSRF MIQPASHLGS GHLKGVPHFL QPRVAHPPST SILDNGGRKN ARSRNDVLVL IRKRKVRITE GASLYSLCRS WLRNGAHEGL
201: QKQQSDTTVT CLPKPLPASD VVETSLPKDS VEEPNCVEED KEDEESVKQL SDADLLKRHV DRAKKVRARL REERLKRIAR YKARLALLLP PFGE
001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE
Arabidopsis Description
Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYK6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.