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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67744
CDX68515
CDX71957
CDX80128
CDX83068
CDX83322
CDX95730
CDX98295
CDY06041
CDY22539
CDY27474
CDY35400
CDY53014
CDY55534
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G47710.1 CDY22539 AT2G41760.1 21798944
AT2G47710.1 CDY35400 AT2G41760.1 21798944
AT2G47710.1 CDX80128 AT2G47710.1 21798944
AT2G47710.1 CDX83322 AT2G47710.1 21798944
AT2G47710.1 CDX95730 AT2G47710.1 21798944
AT2G47710.1 CDY27474 AT2G47710.1 21798944
AT2G47710.1 CDY53014 AT2G47710.1 21798944
AT2G47710.1 CDY55534 AT2G47710.1 21798944
AT2G47710.1 CDX68515 AT3G49160.1 21798944
AT2G47710.1 CDX83068 AT3G49160.1 21798944
AT2G47710.1 CDY69935 AT3G49160.1 21798944
AT2G47710.1 CDX67744 AT3G58450.1 21798944
AT2G47710.1 CDX71957 AT3G58450.1 21798944
AT2G47710.1 CDX98295 AT3G58450.1 21798944
AT2G47710.1 CDY06041 AT3G58450.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004435.1-P Field mustard cytosol 98.15 98.15
CDX80128 Canola cytosol 98.15 98.15
CDY27474 Canola cytosol 35.8 90.62
CDX95730 Canola cytosol 88.89 88.89
CDX83322 Canola cytosol 88.89 88.89
AT2G47710.1 Thale cress cytosol 85.19 85.19
CDY55534 Canola cytosol 83.95 83.95
Solyc06g084540.2.1 Tomato cytosol 68.52 70.7
PGSC0003DMT400061758 Potato cytosol 68.52 70.7
KRH71566 Soybean cytosol 67.9 69.62
GSMUA_Achr5P00180_001 Banana cytosol 66.05 69.48
KRH31878 Soybean cytosol 67.9 67.07
GSMUA_Achr6P20400_001 Banana cytosol 62.35 65.58
PGSC0003DMT400037920 Potato cytosol 64.81 65.22
Solyc06g009050.2.1 Tomato cytosol, nucleus 64.2 64.6
KRG96437 Soybean cytosol 64.2 63.8
GSMUA_Achr8P06640_001 Banana cytosol 62.96 63.75
TraesCS5B01G097600.1 Wheat cytosol 64.81 62.13
TraesCS5D01G104200.1 Wheat cytosol 64.81 62.13
Zm00001d023830_P001 Maize cytosol, extracellular, mitochondrion 64.81 61.4
Os12t0552500-01 Rice cytosol, extracellular, plasma membrane, plastid 63.58 60.95
EES17172 Sorghum cytosol 66.05 60.8
TraesCS5A01G092000.1 Wheat cytosol 64.2 60.47
HORVU5Hr1G024160.3 Barley cytosol 62.96 58.29
Os12t0552400-01 Rice cytosol 56.79 57.5
CDX73846 Canola cytosol 23.46 53.52
CDY53924 Canola cytosol 23.46 53.52
CDY05645 Canola cytosol 54.94 53.29
CDY33932 Canola cytosol 54.32 52.69
Zm00001d041638_P001 Maize cytosol 56.79 52.27
TraesCS5D01G104300.1 Wheat cytosol 60.49 48.76
TraesCS5A01G092100.1 Wheat cytosol 60.49 48.76
TraesCS5B01G097500.1 Wheat cytosol 60.49 48.76
HORVU5Hr1G024170.1 Barley cytosol 59.88 48.02
OQU79284 Sorghum mitochondrion 52.47 45.7
CDY01070 Canola cytosol 35.8 35.37
VIT_07s0005g00290.t01 Wine grape cytosol 71.6 34.42
CDY11426 Canola cytosol 34.57 34.36
CDY63308 Canola cytosol 34.57 34.36
CDX76642 Canola cytosol 34.57 34.15
CDX89141 Canola cytosol 33.95 33.74
CDY20676 Canola cytosol 34.57 32.75
CDY31068 Canola cytosol 34.57 32.75
CDX93484 Canola cytosol 34.57 32.75
CDX94953 Canola cytosol 33.95 31.98
CDY01904 Canola cytosol, peroxisome, plastid 30.25 30.82
CDX96035 Canola cytosol, peroxisome, plastid 30.25 30.82
CDY47907 Canola cytosol 37.04 30.0
CDY06041 Canola cytosol 35.19 30.0
CDY08481 Canola cytosol 37.04 30.0
CDY08484 Canola cytosol 37.04 30.0
CDX71957 Canola cytosol 34.57 29.32
CDX67744 Canola cytosol 34.57 27.86
CDX98295 Canola cytosol 31.48 26.29
CDY09876 Canola cytosol 25.93 24.0
CDX69566 Canola cytosol 25.31 22.78
CDY37513 Canola cytosol 23.46 22.09
CDY49062 Canola cytosol 23.46 21.71
Protein Annotations
EnsemblPlants:CDY53014EnsemblPlantsGene:GSBRNA2T00008331001Gene3D:3.40.50.620GO:A0A078IUA1GO:GO:0006950GO:GO:0008150
InterPro:IPR014729InterPro:Rossmann-like_a/b/a_foldInterPro:Universal_stress_UspAInterPro:UspAPANTHER:PTHR31964PANTHER:PTHR31964:SF106
PFAM:PF00582PRINTS:PR01438ProteinID:CDY53014ProteinID:CDY53014.1SUPFAM:SSF52402UniParc:UPI0004EE3D51
UniProt:A0A078IUA1MapMan:35.2::::
Description
BnaC04g00160DBnaC04g00160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUA1]
Coordinates
chrLK033154:-:28661..30015
Molecular Weight (calculated)
17507.2 Da
IEP (calculated)
7.282
GRAVY (calculated)
0.146
Length
162 amino acids
Sequence
(BLAST)
001: MATGEEKPVM VVGIDESEQS TYALEWTLDR FFTPYAPNFP FKLFIVHAKP NAVSAVGLAG PGAAEVLPYV DTDLKHIAAR VIEMAKGICQ SKSVNGAMFE
101: VFEGDARSIL CDVVDKHHAS LLVVGSHGYG AIKRAVLGSV SDYCAHHAHC SVMIVKKPKI KH
Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.