CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67855
CDY45684

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41760.1	CDX67855	AT3G61150.1	21798944
AT2G41760.1	CDY45684	AT3G61150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000239.1-P	Field mustard	cytosol	88.7	95.33
CDY35400	Canola	cytosol	95.65	93.22
AT2G41760.1	Thale cress	cytosol	84.78	88.24
VIT_08s0007g08710.t01	Wine grape	cytosol	56.52	59.91
KRH33079	Soybean	cytosol	54.78	57.53
PGSC0003DMT400070177	Potato	cytosol	54.78	55.02
Solyc04g015760.2.1	Tomato	cytosol	54.35	54.82
TraesCS1B01G253700.1	Wheat	cytosol	50.43	48.54
TraesCS1A01G242200.1	Wheat	cytosol	50.87	48.35
Os05t0387900-01	Rice	cytosol	48.26	48.05
TraesCS1D01G242100.1	Wheat	cytosol	49.57	47.7
GSMUA_Achr11P...	Banana	cytosol	50.0	46.18
EES19457	Sorghum	cytosol, plastid	46.96	44.44
Zm00001d038071_P002	Maize	cytosol, plastid	48.26	42.53

Protein Annotations

KEGG:00240+3.5.1.-	KEGG:00260+3.5.1.-	KEGG:00332+3.5.1.-	KEGG:00364+3.5.1.-	KEGG:00480+3.5.1.-	KEGG:00520+3.5.1.-
KEGG:00600+3.5.1.-	KEGG:00760+3.5.1.-	KEGG:00930+3.5.1.-	MapMan:19.2.1.2.1.3	Gene3D:3.10.620.10	GO:A0A078GB28
UniProt:A0A078GB28	EnsemblPlants:CDY22539	ProteinID:CDY22539	ProteinID:CDY22539.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0016811	EnsemblPlantsGene:GSBRNA2T00019131001	InterPro:IPR037132	InterPro:N_Gln_amidohydro_ab_roll_sf	PFAM:PF09764
PANTHER:PTHR13035	InterPro:Prot_N_Gln_amidohydro_ab_roll	UniParc:UPI0004EDB318	:	:	:

Description

BnaC03g23490DBnaC03g23490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB28]

Coordinates

chrLK032132:+:497959..499326

Molecular Weight (calculated)

26115.1 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.151

Length

230 amino acids

Sequence
(BLAST)

001: MSSVIISELP AMDATRFQQT PYYCEENVYL LCKTLCESGV ADETGSDLFV VFISNERKQA RMFGLCFVPL WHQKASTRAD GIVLWDYHVI CVQRKKESDS
101: EPLVWDLDST LPFPSPLASY VTETIQPSFQ LFAEYKRFFR VVHAPLFFKH FASDRRHMKG PDGSWIAQPP PYQPIVAQDG VLHNLSEYTA MSATDTLSSL
201: DPETVREAIS QKLGVLVSHS QLQDLFTKLP

Best Arabidopsis Sequence Match ( AT2G41760.1 )
(BLAST)

001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P

Arabidopsis Description

Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.