Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_15s0048g02000.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41760.1 | VIT_15s0048g02000.t01 | AT3G61150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33079 | Soybean | cytosol | 66.36 | 65.75 |
| AT2G41760.1 | Thale cress | cytosol | 60.37 | 59.28 |
| PGSC0003DMT400070177 | Potato | cytosol | 60.37 | 57.21 |
| Bra000239.1-P | Field mustard | cytosol | 56.22 | 57.01 |
| Solyc04g015760.2.1 | Tomato | cytosol | 59.45 | 56.58 |
| CDY22539 | Canola | cytosol | 59.91 | 56.52 |
| CDY35400 | Canola | cytosol | 61.29 | 56.36 |
| Os05t0387900-01 | Rice | cytosol | 53.92 | 50.65 |
| GSMUA_Achr11P... | Banana | cytosol | 55.76 | 48.59 |
| TraesCS1A01G242200.1 | Wheat | cytosol | 53.0 | 47.52 |
| EES19457 | Sorghum | cytosol, plastid | 53.0 | 47.33 |
| TraesCS1B01G253700.1 | Wheat | cytosol | 52.07 | 47.28 |
| TraesCS1D01G242100.1 | Wheat | cytosol | 51.15 | 46.44 |
| Zm00001d038071_P002 | Maize | cytosol, plastid | 52.53 | 43.68 |
Protein Annotations
| EntrezGene:100245162 | wikigene:100245162 | MapMan:19.2.1.2.1.3 | Gene3D:3.10.620.10 | ProteinID:CCB55117 | ProteinID:CCB55117.1 |
| UniProt:F6HKW0 | EMBL:FN595991 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 | GO:GO:0016811 |
| InterPro:IPR037132 | EntrezGene:LOC100245162 | wikigene:LOC100245162 | InterPro:N_Gln_amidohydro_ab_roll_sf | PFAM:PF09764 | PANTHER:PTHR13035 |
| InterPro:Prot_N_Gln_amidohydro_ab_roll | TIGR:TC58435 | UniParc:UPI0001983E40 | ArrayExpress:VIT_08s0007g08710 | EnsemblPlantsGene:VIT_08s0007g08710 | EnsemblPlants:VIT_08s0007g08710.t01 |
| RefSeq:XP_002278513 | RefSeq:XP_002278513.1 | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:22086930..22091720
Molecular Weight (calculated)
24844.3 Da
IEP (calculated)
4.905
GRAVY (calculated)
-0.299
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSNLDISQ FDHTPFYCEE NVYMLCKKLG MIGMADAEGS DLFAVFISNE KKQVPLWHQK ASKRADGIIL WDYHVICIQI KKEGSSPPQV WDLDSSLPFP
101: SHLDHYMSDS FRPSFQLFSD YQRFFRIVHA PLFLHSFASD RRHMKNSDGN WISPPPAQDP IVADDGSLYN LDEYIRMNAA DAVTEVKDDT ISAVFTQKYG
201: VLVRESQLEE FFSLLSG
101: SHLDHYMSDS FRPSFQLFSD YQRFFRIVHA PLFLHSFASD RRHMKNSDGN WISPPPAQDP IVADDGSLYN LDEYIRMNAA DAVTEVKDDT ISAVFTQKYG
201: VLVRESQLEE FFSLLSG
001: MSGVTSEPIA MDATRFQHTP YYCEENVYLL CKTLCENGVA EATCSDLFVV FISNEKKQVP LWHQKASTRA DGVVLWDYHV ICVQRKKESD SEPLVWDLDS
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
101: TLPFPSPLAS YVTETIQPSF QLFAEYQRFF RIVHAPLFFK HFASDRRHMK EPDGSWTAQP PPYEPIVAQD GILHNLSEYI AMSGADTLSS LDPETVTAAI
201: SQKLGVVVSH TQLQDLFTKL P
Arabidopsis Description
Protein N-terminal glutamine amidohydrolase [Source:UniProtKB/Swiss-Prot;Acc:O22944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.