Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0387900-01 | |
| Os10t0437500-01 | |
| Os12t0552400-01 | |
| Os12t0552500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47710.1 | Os05t0387900-01 | AT2G41760.1 | 21798944 |
| AT2G47710.1 | Os12t0552400-01 | AT2G47710.1 | 21798944 |
| AT2G47710.1 | Os12t0552500-01 | AT2G47710.1 | 21798944 |
| AT2G47710.1 | Os10t0437500-01 | AT3G58450.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27474 | Canola | cytosol | 30.0 | 75.0 |
| Zm00001d041638_P001 | Maize | cytosol | 70.0 | 63.64 |
| Os12t0552500-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 66.25 | 62.72 |
| GSMUA_Achr6P20400_001 | Banana | cytosol | 59.38 | 61.69 |
| GSMUA_Achr5P00180_001 | Banana | cytosol | 59.38 | 61.69 |
| TraesCS5D01G104300.1 | Wheat | cytosol | 74.38 | 59.2 |
| TraesCS5B01G097500.1 | Wheat | cytosol | 73.75 | 58.71 |
| TraesCS5A01G092100.1 | Wheat | cytosol | 73.12 | 58.21 |
| PGSC0003DMT400061758 | Potato | cytosol | 56.88 | 57.96 |
| HORVU5Hr1G024170.1 | Barley | cytosol | 73.12 | 57.92 |
| OQU79284 | Sorghum | mitochondrion | 66.88 | 57.53 |
| GSMUA_Achr8P06640_001 | Banana | cytosol | 57.5 | 57.5 |
| Bra000458.1-P | Field mustard | cytosol | 58.12 | 57.41 |
| CDX83322 | Canola | cytosol | 58.12 | 57.41 |
| CDX95730 | Canola | cytosol | 58.12 | 57.41 |
| AT2G47710.1 | Thale cress | cytosol | 58.12 | 57.41 |
| Solyc06g084540.2.1 | Tomato | cytosol | 56.25 | 57.32 |
| Bra004435.1-P | Field mustard | cytosol | 57.5 | 56.79 |
| CDX80128 | Canola | cytosol | 57.5 | 56.79 |
| CDY53014 | Canola | cytosol | 57.5 | 56.79 |
| PGSC0003DMT400037920 | Potato | cytosol | 56.25 | 55.9 |
| CDY55534 | Canola | cytosol | 56.25 | 55.56 |
| Bra021440.1-P | Field mustard | cytosol | 56.25 | 55.56 |
| Solyc06g009050.2.1 | Tomato | cytosol, nucleus | 55.62 | 55.28 |
| KRG96437 | Soybean | cytosol | 55.62 | 54.6 |
| KRH71566 | Soybean | cytosol | 53.75 | 54.43 |
| KRH31878 | Soybean | cytosol | 55.62 | 54.27 |
| Os07t0673400-01 | Rice | cytosol | 53.12 | 49.71 |
| Os10t0437500-01 | Rice | cytosol, plasma membrane, plastid | 37.5 | 33.15 |
| Os03t0305400-01 | Rice | plastid | 36.25 | 32.22 |
| Os01t0511100-01 | Rice | plastid | 32.5 | 31.14 |
| Os01t0303800-02 | Rice | plasma membrane | 33.12 | 29.12 |
| Os02t0760500-01 | Rice | cytosol | 29.38 | 29.01 |
| VIT_07s0005g00290.t01 | Wine grape | cytosol | 60.62 | 28.78 |
Protein Annotations
| Gene3D:3.40.50.620 | MapMan:35.2 | EntrezGene:4352471 | ProteinID:ABA99525.1 | EMBL:AK070150 | ProteinID:BAF30001.1 |
| ProteinID:BAT17576.1 | ProteinID:EAZ20817.1 | GO:GO:0006950 | GO:GO:0008150 | InterPro:IPR014729 | EnsemblPlantsGene:Os12g0552400 |
| EnsemblPlants:Os12t0552400-01 | PFAM:PF00582 | PRINTS:PR01438 | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF118 | UniProt:Q2QNV3 |
| InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | UniParc:UPI0000680E62 | InterPro:Universal_stress_UspA | InterPro:UspA | RefSeq:XP_015620583.1 |
| SEG:seg | : | : | : | : | : |
Description
Rossmann-like alpha/beta/alpha sandwich fold domain containing protein. (Os12t0552400-01)
Coordinates
chr12:-:22427863..22429178
Molecular Weight (calculated)
17543.2 Da
IEP (calculated)
7.361
GRAVY (calculated)
-0.054
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGGKPVML VGIDDSDHSY YALEWTLKHF FALGQPQQYH LVLLTSKPPA SAVIGIAGLG TTELLPTLEL DLKRGAARVI EKAKEMCSQV IDASYEVLEG
101: DARNILCEAV ERHHADMLVV GSHGYGAWKR AVLGSVSDYC SHHAHCTVMI VKRPKHNTHS
101: DARNILCEAV ERHHADMLVV GSHGYGAWKR AVLGSVSDYC SHHAHCTVMI VKRPKHNTHS
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.