Factsheet for PGSC0003DMT400037920

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
peroxisome 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037920
PGSC0003DMT400050451
PGSC0003DMT400061758
PGSC0003DMT400070177

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47710.1	PGSC0003DMT400070177	AT2G41760.1	21798944
AT2G47710.1	PGSC0003DMT400037920	AT2G47710.1	21798944
AT2G47710.1	PGSC0003DMT400061758	AT2G47710.1	21798944
AT2G47710.1	PGSC0003DMT400050451	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009050.2.1	Tomato	cytosol, nucleus	95.65	95.65
CDY27474	Canola	cytosol	29.81	75.0
PGSC0003DMT400061758	Potato	cytosol	68.32	70.06
GSMUA_Achr5P00180_001	Banana	cytosol	66.46	69.48
CDY53014	Canola	cytosol	65.22	64.81
GSMUA_Achr6P20400_001	Banana	cytosol	61.49	64.29
AT2G47710.1	Thale cress	cytosol	63.35	62.96
CDX80128	Canola	cytosol	63.35	62.96
Bra004435.1-P	Field mustard	cytosol	63.35	62.96
CDX95730	Canola	cytosol	62.11	61.73
CDX83322	Canola	cytosol	62.11	61.73
CDY55534	Canola	cytosol	62.11	61.73
Bra021440.1-P	Field mustard	cytosol	62.11	61.73
Bra000458.1-P	Field mustard	cytosol	62.11	61.73
PGSC0003DMT400021775	Potato	cytosol	56.52	59.87
GSMUA_Achr8P06640_001	Banana	cytosol	59.01	59.38
KRG96437	Soybean	cytosol	59.63	58.9
KRH71566	Soybean	cytosol	57.76	58.86
PGSC0003DMT400029496	Potato	cytosol	57.14	58.6
KRH31878	Soybean	cytosol	59.01	57.93
Os12t0552400-01	Rice	cytosol	55.9	56.25
TraesCS5D01G104200.1	Wheat	cytosol	57.76	55.03
TraesCS5B01G097600.1	Wheat	cytosol	57.76	55.03
PGSC0003DMT400011994	Potato	cytosol	54.04	54.38
Zm00001d023830_P001	Maize	cytosol, extracellular, mitochondrion	57.14	53.8
TraesCS5A01G092000.1	Wheat	cytosol	57.14	53.49
Os12t0552500-01	Rice	cytosol, extracellular, plasma membrane, plastid	55.9	53.25
EES17172	Sorghum	cytosol	57.76	52.84
HORVU5Hr1G024160.3	Barley	cytosol	57.14	52.57
Zm00001d041638_P001	Maize	cytosol	55.9	51.14
OQU79284	Sorghum	mitochondrion	52.8	45.7
TraesCS5A01G092100.1	Wheat	cytosol	54.04	43.28
TraesCS5B01G097500.1	Wheat	cytosol	54.04	43.28
TraesCS5D01G104300.1	Wheat	cytosol	53.42	42.79
HORVU5Hr1G024170.1	Barley	cytosol	53.42	42.57
PGSC0003DMT400007287	Potato	cytosol	39.75	38.55
VIT_07s0005g00290.t01	Wine grape	cytosol	70.81	33.83
PGSC0003DMT400084231	Potato	cytosol	33.54	30.17
PGSC0003DMT400033576	Potato	cytosol	29.81	27.91
PGSC0003DMT400080606	Potato	cytosol	26.71	24.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400037920	EnsemblPlantsGene:PGSC0003DMG400014628	EntrezGene:102583766	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF16
PFAM:PF00582	PGSC:PGSC0003DMG400014628	PRINTS:PR01438	RefSeq:XP_006355801.1	SUPFAM:SSF52402	UniParc:UPI000294A8FF
UniProt:M1B648	MapMan:35.2	:	:	:	:

Description

Universal stress protein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014628]

Coordinates

chr6:-:539122..541554

Molecular Weight (calculated)

17463.2 Da

IEP (calculated)

7.598

GRAVY (calculated)

0.137

Length

161 amino acids

Sequence
(BLAST)

001: MGEEKSVMVV GIEDNQHSFY ALEWTLDHFF TNYNSNSPFK LVILHAKPTP ASIIGLAAGP GSVEAFSAIE SNLKKIAARV VEKAMEICKA KSVNDVVVEM
101: VEGDARHVLC EAVEKLHASV LVVGCHGYGV IKRTVLGSVS DYCAHHAHCS VMIVKKPKTK T

Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)

001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.