Factsheet for PGSC0003DMT400080606

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g062860.1.1	Tomato	cytosol, extracellular	97.71	97.71
Bra008745.1-P	Field mustard	cytosol	81.71	81.71
VIT_14s0066g01130.t01	Wine grape	cytosol	81.71	81.71
CDY09876	Canola	cytosol	81.14	81.14
KRG93269	Soybean	cytosol, nucleus	81.14	81.14
KRH56590	Soybean	cytosol, nucleus	81.14	81.14
AT5G14680.1	Thale cress	cytosol, nucleus, plastid	80.57	80.57
TraesCS6D01G254400.1	Wheat	cytosol	78.86	77.97
TraesCS6B01G301700.1	Wheat	cytosol	78.29	77.4
TraesCS6A01G274200.1	Wheat	cytosol	78.29	77.4
TraesCS6B01G312700.1	Wheat	cytosol	77.71	76.84
CDX69566	Canola	cytosol	78.86	76.67
Zm00001d051584_P001	Maize	cytosol, extracellular	77.14	76.27
EES05648	Sorghum	cytosol	77.14	76.27
CDY37513	Canola	cytosol	74.86	76.16
Bra039110.1-P	Field mustard	cytosol	74.86	76.16
CDY49062	Canola	cytosol	75.43	75.43
AT3G01520.1	Thale cress	cytosol	74.86	74.86
GSMUA_Achr1P26770_001	Banana	cytosol	71.43	74.85
HORVU6Hr1G069260.1	Barley	vacuole	77.14	66.5
PGSC0003DMT400007287	Potato	cytosol	25.71	27.11
PGSC0003DMT400084231	Potato	cytosol	27.43	26.82
PGSC0003DMT400061758	Potato	cytosol	24.0	26.75
PGSC0003DMT400037920	Potato	cytosol	24.57	26.71
PGSC0003DMT400029496	Potato	cytosol	23.43	26.11
PGSC0003DMT400021775	Potato	cytosol	21.71	25.0
PGSC0003DMT400033576	Potato	cytosol	24.57	25.0
PGSC0003DMT400011994	Potato	cytosol	22.29	24.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400080606	EnsemblPlantsGene:PGSC0003DMG400031388	EntrezGene:102579186	Gene3D:3.40.50.620	GO:GO:0006950	GO:GO:0008150
InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964	PANTHER:PTHR31964:SF49
PFAM:PF00582	PGSC:PGSC0003DMG400031388	PRINTS:PR01438	RefSeq:XP_006364005.1	SUPFAM:SSF52402	UniParc:UPI0002956366
UniProt:M1D3Q7	MapMan:35.1	:	:	:	:

Description

Ethylene response protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031388]

Coordinates

chr12:+:20336157..20345737

Molecular Weight (calculated)

19577.5 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.239

Length

175 amino acids

Sequence
(BLAST)

001: MEGEATRVMV AVNESTIKGY PHASISSKGA FEWTLNKIVR SNTSGFKLLF LHVQVPDEDG FEDMDSIFAS PDDFKGMKNR DKIRGLHLLE YFVNRCHEIG
101: VPCEAWIKKG DPKEVICHEV KRVQPDLLVV GCRGLGPFQR VFVGTVSEFC VKHAECPVVT IKRSAAETPQ DPIDD

Best Arabidopsis Sequence Match ( AT5G14680.1 )
(BLAST)

001: MESEPTRVMV AVNESTLKGY PHASISSKKA FEWTLKKIVR SNTSGFKLLL LHVQVQDEDG FDDMDSIYAS PDDFRQMRER NKAKGLHLLE FFVKKCHDIG
101: VGCEAWIRKG DPTELICHEV RRVRPDFLVV GSRGLGPFQK VFVGTVSEFC VKHAECPVIT IKRTAEESPQ DPADD

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.