Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g054270.2.1 | Tomato | cytosol | 94.08 | 90.51 |
| PGSC0003DMT400029496 | Potato | cytosol | 71.05 | 68.79 |
| PGSC0003DMT400011994 | Potato | cytosol | 69.74 | 66.25 |
| PGSC0003DMT400061758 | Potato | cytosol | 58.55 | 56.69 |
| PGSC0003DMT400037920 | Potato | cytosol | 59.87 | 56.52 |
| VIT_05s0020g01190.t01 | Wine grape | cytosol | 58.55 | 56.33 |
| KRH22975 | Soybean | cytosol, peroxisome, plastid | 55.26 | 51.22 |
| Bra020665.1-P | Field mustard | cytosol | 53.95 | 49.1 |
| CDY05645 | Canola | cytosol | 53.95 | 49.1 |
| CDY33932 | Canola | cytosol | 53.95 | 49.1 |
| PGSC0003DMT400007287 | Potato | cytosol | 40.13 | 36.75 |
| AT5G49050.1 | Thale cress | cytosol | 32.24 | 32.67 |
| PGSC0003DMT400084231 | Potato | cytosol | 34.21 | 29.05 |
| PGSC0003DMT400033576 | Potato | cytosol | 26.97 | 23.84 |
| PGSC0003DMT400080606 | Potato | cytosol | 25.0 | 21.71 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021775 | EnsemblPlantsGene:PGSC0003DMG400008451 | EntrezGene:102587804 | Gene3D:3.40.50.620 | GO:GO:0006950 | GO:GO:0008150 |
| InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | InterPro:Universal_stress_UspA | InterPro:UspA | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF16 |
| PFAM:PF00582 | PGSC:PGSC0003DMG400008451 | PRINTS:PR01438 | RefSeq:XP_015160107.1 | SUPFAM:SSF52402 | UniParc:UPI0002969B02 |
| UniProt:M1AFP1 | MapMan:35.2 | : | : | : | : |
Description
Fiber protein Fb19 [Source:PGSC_GENE;Acc:PGSC0003DMG400008451]
Coordinates
chr5:+:49923277..49925184
Molecular Weight (calculated)
16555.9 Da
IEP (calculated)
7.569
GRAVY (calculated)
0.003
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFALDDSDH SYYALEWTLD HFFPSPSISN FKLIIIHAKP TPNSVVAIAG PGTSDMFTLV ETDITKAAQK TIDKSKELCK TKGVSNVACE ILEGDARNVI
101: CEAVEKYHAS ILAMGSHGYG AFKRAVLGSV SDYCSHHAHC SVMIVKKPKP KV
101: CEAVEKYHAS ILAMGSHGYG AFKRAVLGSV SDYCSHHAHC SVMIVKKPKP KV
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.