CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56590	Soybean	cytosol, nucleus	95.43	95.43
PGSC0003DMT400080606	Potato	cytosol	81.14	81.14
Solyc12g062860.1.1	Tomato	cytosol, extracellular	80.57	80.57
VIT_14s0066g01130.t01	Wine grape	cytosol	77.71	77.71
CDY09876	Canola	cytosol	75.43	75.43
Bra008745.1-P	Field mustard	cytosol	74.86	74.86
TraesCS6D01G254400.1	Wheat	cytosol	74.86	74.01
TraesCS6B01G312700.1	Wheat	cytosol	74.86	74.01
TraesCS6B01G301700.1	Wheat	cytosol	74.86	74.01
TraesCS6A01G274200.1	Wheat	cytosol	74.86	74.01
Zm00001d051584_P001	Maize	cytosol, extracellular	74.29	73.45
AT5G14680.1	Thale cress	cytosol, nucleus, plastid	73.14	73.14
EES05648	Sorghum	cytosol	73.71	72.88
AT3G01520.1	Thale cress	cytosol	70.29	70.29
GSMUA_Achr1P26770_001	Banana	cytosol	66.86	70.06
CDX69566	Canola	cytosol	72.0	70.0
Bra039110.1-P	Field mustard	cytosol	68.57	69.77
CDY37513	Canola	cytosol	68.57	69.77
CDY49062	Canola	cytosol	69.71	69.71
HORVU6Hr1G069260.1	Barley	vacuole	72.57	62.56
KRH69227	Soybean	cytosol	27.43	30.97
KRH33831	Soybean	endoplasmic reticulum	28.0	30.25
KRH31806	Soybean	cytosol	26.86	28.83
KRG96520	Soybean	cytosol	25.71	28.66
KRH16835	Soybean	cytosol, plastid	28.57	27.93
KRH71566	Soybean	cytosol	23.43	25.95
KRH68444	Soybean	cytosol	25.71	25.42
KRG96728	Soybean	cytosol	25.71	25.42
KRH31878	Soybean	cytosol	22.86	24.39
KRH71765	Soybean	endoplasmic reticulum	25.14	23.04
KRG96437	Soybean	cytosol	20.0	21.47
KRH22975	Soybean	cytosol, peroxisome, plastid	20.0	21.34
KRH72447	Soybean	cytosol	20.57	21.05

Protein Annotations

EntrezGene:100818031	Gene3D:3.40.50.620	MapMan:35.1	EMBL:ACUP02011546	EnsemblPlantsGene:GLYMA_19G006700	GO:GO:0006950
GO:GO:0008150	UniProt:I1N5P1	InterPro:IPR014729	EnsemblPlants:KRG93269	ProteinID:KRG93269	ProteinID:KRG93269.1
PFAM:PF00582	PRINTS:PR01438	PANTHER:PTHR31964	PANTHER:PTHR31964:SF49	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402
UniParc:UPI000233EFFA	InterPro:Universal_stress_UspA	InterPro:UspA	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:665192..667655

Molecular Weight (calculated)

19909.8 Da

IEP (calculated)

5.558

GRAVY (calculated)

-0.266

Length

175 amino acids

Sequence
(BLAST)

001: MAEEVTRVMV AVNESSIKGY PHPSISSKGA FDWTINKIVR DNVSAFNLLF LHVQVPDEDG FDDMDSIFAS PDDFKNMNQR DRIRGVHLLE YFINRCHEIG
101: VVCQAWIMHG DPKEVICHEV KRLRPDLLVV GSRGLGPFQK VFVGTVSEFC WKHAECPVIS IKRKPDETPQ DPVDD

Best Arabidopsis Sequence Match ( AT5G14680.1 )
(BLAST)

001: MESEPTRVMV AVNESTLKGY PHASISSKKA FEWTLKKIVR SNTSGFKLLL LHVQVQDEDG FDDMDSIYAS PDDFRQMRER NKAKGLHLLE FFVKKCHDIG
101: VGCEAWIRKG DPTELICHEV RRVRPDFLVV GSRGLGPFQK VFVGTVSEFC VKHAECPVIT IKRTAEESPQ DPADD

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ2]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.