Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49062 | Canola | cytosol | 85.71 | 85.71 |
| Bra039110.1-P | Field mustard | cytosol | 84.0 | 85.47 |
| CDY37513 | Canola | cytosol | 84.0 | 85.47 |
| AT5G14680.1 | Thale cress | cytosol, nucleus, plastid | 80.57 | 80.57 |
| PGSC0003DMT400080606 | Potato | cytosol | 74.86 | 74.86 |
| Solyc12g062860.1.1 | Tomato | cytosol, extracellular | 74.29 | 74.29 |
| VIT_14s0066g01130.t01 | Wine grape | cytosol | 73.14 | 73.14 |
| KRG93269 | Soybean | cytosol, nucleus | 70.29 | 70.29 |
| KRH56590 | Soybean | cytosol, nucleus | 70.29 | 70.29 |
| Zm00001d051584_P001 | Maize | cytosol, extracellular | 70.86 | 70.06 |
| EES05648 | Sorghum | cytosol | 70.29 | 69.49 |
| TraesCS6D01G254400.1 | Wheat | cytosol | 69.71 | 68.93 |
| TraesCS6B01G301700.1 | Wheat | cytosol | 69.14 | 68.36 |
| TraesCS6A01G274200.1 | Wheat | cytosol | 69.14 | 68.36 |
| TraesCS6B01G312700.1 | Wheat | cytosol | 68.57 | 67.8 |
| GSMUA_Achr1P26770_001 | Banana | cytosol | 63.43 | 66.47 |
| HORVU6Hr1G069260.1 | Barley | vacuole | 69.14 | 59.61 |
| AT1G68300.1 | Thale cress | cytosol, peroxisome, plastid | 26.86 | 29.38 |
| AT1G09740.1 | Thale cress | cytosol | 28.0 | 28.66 |
| AT2G47710.1 | Thale cress | cytosol | 23.43 | 25.31 |
| AT3G58450.1 | Thale cress | cytosol | 29.14 | 25.0 |
| AT3G62550.1 | Thale cress | cytosol | 21.71 | 23.46 |
| AT3G11930.3 | Thale cress | cytosol | 24.57 | 19.03 |
| AT5G49050.1 | Thale cress | cytosol | 10.86 | 12.67 |
Protein Annotations
| PDB:2GM3 | Gene3D:3.40.50.620 | MapMan:35.1 | EntrezGene:821122 | ProteinID:AAF01537.1 | ProteinID:AEE73681.1 |
| EMBL:AF446878 | ArrayExpress:AT3G01520 | EnsemblPlantsGene:AT3G01520 | RefSeq:AT3G01520 | TAIR:AT3G01520 | RefSeq:AT3G01520-TAIR-G |
| EnsemblPlants:AT3G01520.1 | TAIR:AT3G01520.1 | EMBL:AY052696 | EMBL:AY084275 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016208 | InterPro:IPR014729 | RefSeq:NP_566140.1 | PFAM:PF00582 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01438 | PANTHER:PTHR31964 | PANTHER:PTHR31964:SF49 |
| UniProt:Q8LGG8 | InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | UniParc:UPI00000A5916 | InterPro:Universal_stress_UspA | InterPro:UspA |
Description
Universal stress protein A-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG8]
Coordinates
chr3:+:208250..210161
Molecular Weight (calculated)
19569.4 Da
IEP (calculated)
5.687
GRAVY (calculated)
-0.275
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSEPTKVMV AVNASTIKDY PNPSISCKRA FEWTLEKIVR SNTSDFKILL LHVQVVDEDG FDDVDSIYAS PEDFRDMRQS NKAKGLHLLE FFVNKCHEIG
101: VGCEAWIKTG DPKDVICQEV KRVRPDFLVV GSRGLGRFQK VFVGTVSAFC VKHAECPVMT IKRNADETPS DPADD
101: VGCEAWIKTG DPKDVICQEV KRVRPDFLVV GSRGLGRFQK VFVGTVSAFC VKHAECPVMT IKRNADETPS DPADD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.