CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93269	Soybean	cytosol, nucleus	95.43	95.43
Solyc12g062860.1.1	Tomato	cytosol, extracellular	81.14	81.14
PGSC0003DMT400080606	Potato	cytosol	81.14	81.14
VIT_14s0066g01130.t01	Wine grape	cytosol	78.29	78.29
CDY09876	Canola	cytosol	76.0	76.0
Bra008745.1-P	Field mustard	cytosol	75.43	75.43
AT5G14680.1	Thale cress	cytosol, nucleus, plastid	74.29	74.29
TraesCS6B01G312700.1	Wheat	cytosol	74.29	73.45
TraesCS6B01G301700.1	Wheat	cytosol	74.29	73.45
TraesCS6A01G274200.1	Wheat	cytosol	74.29	73.45
TraesCS6D01G254400.1	Wheat	cytosol	73.71	72.88
Zm00001d051584_P001	Maize	cytosol, extracellular	73.14	72.32
EES05648	Sorghum	cytosol	72.57	71.75
CDX69566	Canola	cytosol	72.57	70.56
Bra039110.1-P	Field mustard	cytosol	69.14	70.35
CDY37513	Canola	cytosol	69.14	70.35
AT3G01520.1	Thale cress	cytosol	70.29	70.29
CDY49062	Canola	cytosol	70.29	70.29
GSMUA_Achr1P26770_001	Banana	cytosol	66.29	69.46
HORVU6Hr1G069260.1	Barley	vacuole	72.0	62.07
KRH69227	Soybean	cytosol	27.43	30.97
KRG96520	Soybean	cytosol	26.29	29.3
KRH33831	Soybean	endoplasmic reticulum	26.86	29.01
KRH31806	Soybean	cytosol	26.86	28.83
KRH16835	Soybean	cytosol, plastid	27.43	26.82
KRH71566	Soybean	cytosol	22.86	25.32
KRH68444	Soybean	cytosol	24.57	24.29
KRG96728	Soybean	cytosol	24.57	24.29
KRH31878	Soybean	cytosol	22.29	23.78
KRH71765	Soybean	endoplasmic reticulum	24.57	22.51
KRG96437	Soybean	cytosol	20.57	22.09
KRH22975	Soybean	cytosol, peroxisome, plastid	20.57	21.95
KRH72447	Soybean	cytosol	19.43	19.88

Protein Annotations

EMBL:ACUP02002787	EMBL:BT089109	EnsemblPlants:KRH56590	EnsemblPlantsGene:GLYMA_05G006300	EntrezGene:100305494	Gene3D:3.40.50.620
GO:GO:0006950	GO:GO:0008150	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA
PANTHER:PTHR31964	PANTHER:PTHR31964:SF49	PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH56590	ProteinID:KRH56590.1
SUPFAM:SSF52402	UniParc:UPI0001B15643	UniProt:C6SVB6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr5:-:571433..573919

Molecular Weight (calculated)

19951.0 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.321

Length

175 amino acids

Sequence
(BLAST)

001: MAEEVTRVMV AVNESSMKGY PHPSISSKGA FEWTINKIVR NNVSAFNLLF LHVQVPDEDG FNDMDSIYAS PDDFKNMNQR DRIRGVHLME YFVNRCHEIG
101: VVCQAWIMKG DPKEVICHEV KRLRPDLLVV GSRGLGPFQK VFVGTVSEFC WKHAECPVIS IKRKPDETPQ DPVDD

Best Arabidopsis Sequence Match ( AT5G14680.1 )
(BLAST)

001: MESEPTRVMV AVNESTLKGY PHASISSKKA FEWTLKKIVR SNTSGFKLLL LHVQVQDEDG FDDMDSIYAS PDDFRQMRER NKAKGLHLLE FFVKKCHDIG
101: VGCEAWIRKG DPTELICHEV RRVRPDFLVV GSRGLGPFQK VFVGTVSEFC VKHAECPVIT IKRTAEESPQ DPADD

Arabidopsis Description

Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.