CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73846	Canola	cytosol	23.56	63.38
CDY53924	Canola	cytosol	23.56	63.38
VIT_08s0032g00590.t01	Wine grape	cytosol, plastid	39.79	58.91
CDY01070	Canola	cytosol	45.03	52.44
PGSC0003DMT400084231	Potato	cytosol	47.12	50.28
Solyc01g057000.2.1	Tomato	cytosol	44.5	49.42
CDY08481	Canola	cytosol	49.74	47.5
CDY47907	Canola	cytosol	49.74	47.5
Bra001427.1-P	Field mustard	cytosol	49.21	47.47
Bra038688.1-P	Field mustard	cytosol	49.21	47.0
Bra034800.1-P	Field mustard	cytosol	47.64	45.5
CDY08484	Canola	cytosol	47.64	45.5
GSMUA_Achr2P08790_001	Banana	cytosol	43.46	44.62
TraesCS5A01G389700.1	Wheat	cytosol	41.36	44.13
GSMUA_Achr3P25610_001	Banana	cytosol	43.98	43.98
TraesCS5D01G399600.1	Wheat	cytosol	40.84	41.94
AT3G11930.3	Thale cress	cytosol	49.21	41.59
Os10t0437500-01	Rice	cytosol, plasma membrane, plastid	39.27	41.44
HORVU5Hr1G095180.3	Barley	cytosol	39.79	41.08
TraesCS5A01G389500.1	Wheat	cytosol	38.74	40.44
HORVU5Hr1G095160.1	Barley	peroxisome	39.27	40.32
KRG96437	Soybean	cytosol	34.03	39.88
Zm00001d034027_P001	Maize	cytosol	37.7	38.71
KRH71566	Soybean	cytosol	31.94	38.61
TraesCS5B01G394700.1	Wheat	cytosol	36.65	37.84
HORVU5Hr1G047510.1	Barley	cytosol	37.17	37.57
TraesCS5A01G389400.2	Wheat	cytosol	40.84	37.5
TraesCS5A01G151500.2	Wheat	cytosol	37.17	36.98
EER93447	Sorghum	cytosol	37.17	36.79
KRH69227	Soybean	cytosol	29.84	36.77
TraesCS5D01G156700.1	Wheat	cytosol	36.65	36.65
KRH31878	Soybean	cytosol	31.41	36.59
TraesCS5B01G150100.1	Wheat	cytosol	35.6	35.98
KRG96728	Soybean	cytosol	32.46	35.03
KRH31806	Soybean	cytosol	29.84	34.97
TraesCS5D01G399500.1	Wheat	cytosol	37.17	34.8
TraesCS5D01G399400.2	Wheat	cytosol	37.7	34.78
TraesCS5B01G394600.1	Wheat	cytosol	39.27	34.4
KRH33831	Soybean	endoplasmic reticulum	28.8	33.95
KRG96520	Soybean	cytosol	27.75	33.76
KRH22975	Soybean	cytosol, peroxisome, plastid	28.8	33.54
KRH68444	Soybean	cytosol	30.89	33.33
KRH16835	Soybean	cytosol, plastid	30.37	32.4
KRG93269	Soybean	cytosol, nucleus	23.04	25.14
OQU91731	Sorghum	plastid	41.36	25.0
KRH56590	Soybean	cytosol, nucleus	22.51	24.57
KRH72447	Soybean	cytosol	21.47	23.98

Protein Annotations

EMBL:ACUP02001069	EnsemblPlants:KRH71765	EnsemblPlantsGene:GLYMA_02G167700	EntrezGene:100804300	Gene3D:3.40.50.620	GO:GO:0006950
GO:GO:0008150	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	InterPro:Universal_stress_UspA	InterPro:UspA	PANTHER:PTHR31964
PANTHER:PTHR31964:SF15	PFAM:PF00582	PRINTS:PR01438	ProteinID:KRH71765	ProteinID:KRH71765.1	SUPFAM:SSF52402
UniParc:UPI000233712C	UniProt:I1JFX0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:25824020..25826488

Molecular Weight (calculated)

20694.1 Da

IEP (calculated)

7.195

GRAVY (calculated)

-0.041

Length

191 amino acids

Sequence
(BLAST)

001: MEGTNSSGDN VSAGVVQSRM RMKVMVAIDE SEGSFYALKW ALDNLFTTMA TVGEASSPEN DGMVFLVHVE PKVHNYVYPI GPGGAAFYPA TVVVDSVKKA
101: QQERSAAILS RALKMCHDKL VKGESIILHG DAREMICEAA EQMQINLLVL GSRGLGTLKR TFLGSVSDYC AHHAKTPILI VKPPSEHSKM Q

Best Arabidopsis Sequence Match ( AT3G11930.1 )
(BLAST)

001: MAEEQAATAM ETSAVEKQPE TTTEAEAPSL TTKRMVVAID ESDSSFYALQ WVIDHFSNLL LTTAAAEAES GMLTVIHVQS PFNHFAAFPA GPGGATVYAS
101: SSMIESVKKA QQETSAALLS RALQMCRAKQ IRTETLVLEG EAKEMICEAV EKMHVDLLVV GSRGLGKIKR AFLGSVSDYC AHHANCPILI VKPPKEMTK

Arabidopsis Description

AT3G11930 protein [Source:UniProtKB/TrEMBL;Acc:B9DG73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.