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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67744
CDX68515
CDX71957
CDX80128
CDX83068
CDX83322
CDX95730
CDX98295
CDY06041
CDY22539
CDY27474
CDY35400
CDY53014
CDY55534
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G47710.1 CDY22539 AT2G41760.1 21798944
AT2G47710.1 CDY35400 AT2G41760.1 21798944
AT2G47710.1 CDX80128 AT2G47710.1 21798944
AT2G47710.1 CDX83322 AT2G47710.1 21798944
AT2G47710.1 CDX95730 AT2G47710.1 21798944
AT2G47710.1 CDY27474 AT2G47710.1 21798944
AT2G47710.1 CDY53014 AT2G47710.1 21798944
AT2G47710.1 CDY55534 AT2G47710.1 21798944
AT2G47710.1 CDX68515 AT3G49160.1 21798944
AT2G47710.1 CDX83068 AT3G49160.1 21798944
AT2G47710.1 CDY69935 AT3G49160.1 21798944
AT2G47710.1 CDX67744 AT3G58450.1 21798944
AT2G47710.1 CDX71957 AT3G58450.1 21798944
AT2G47710.1 CDX98295 AT3G58450.1 21798944
AT2G47710.1 CDY06041 AT3G58450.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021440.1-P Field mustard cytosol 100.0 100.0
CDY27474 Canola cytosol 39.51 100.0
CDX95730 Canola cytosol 88.89 88.89
CDX83322 Canola cytosol 88.27 88.27
AT2G47710.1 Thale cress cytosol 85.19 85.19
CDX80128 Canola cytosol 84.57 84.57
CDY53014 Canola cytosol 83.95 83.95
KRH71566 Soybean cytosol 63.58 65.19
Solyc06g084540.2.1 Tomato cytosol 62.96 64.97
PGSC0003DMT400061758 Potato cytosol 62.96 64.97
GSMUA_Achr5P00180_001 Banana cytosol 60.49 63.64
KRH31878 Soybean cytosol 63.58 62.8
Solyc06g009050.2.1 Tomato cytosol, nucleus 61.73 62.11
PGSC0003DMT400037920 Potato cytosol 61.73 62.11
GSMUA_Achr6P20400_001 Banana cytosol 58.64 61.69
KRG96437 Soybean cytosol 61.73 61.35
TraesCS5B01G097600.1 Wheat cytosol 61.73 59.17
Zm00001d023830_P001 Maize cytosol, extracellular, mitochondrion 62.35 59.06
GSMUA_Achr8P06640_001 Banana cytosol 58.02 58.75
TraesCS5D01G104200.1 Wheat cytosol 61.11 58.58
Os12t0552500-01 Rice cytosol, extracellular, plasma membrane, plastid 61.11 58.58
TraesCS5A01G092000.1 Wheat cytosol 61.11 57.56
EES17172 Sorghum cytosol 61.73 56.82
Os12t0552400-01 Rice cytosol 55.56 56.25
HORVU5Hr1G024160.3 Barley cytosol 59.88 55.43
CDY05645 Canola cytosol 56.17 54.49
CDY33932 Canola cytosol 55.56 53.89
CDX73846 Canola cytosol 22.84 52.11
CDY53924 Canola cytosol 22.84 52.11
Zm00001d041638_P001 Maize cytosol 51.23 47.16
TraesCS5D01G104300.1 Wheat cytosol 58.02 46.77
TraesCS5A01G092100.1 Wheat cytosol 58.02 46.77
TraesCS5B01G097500.1 Wheat cytosol 58.02 46.77
HORVU5Hr1G024170.1 Barley cytosol 57.41 46.04
OQU79284 Sorghum mitochondrion 51.85 45.16
CDY01070 Canola cytosol 36.42 35.98
CDY63308 Canola cytosol 33.95 33.74
CDY11426 Canola cytosol 33.95 33.74
CDX76642 Canola cytosol 33.95 33.54
VIT_07s0005g00290.t01 Wine grape cytosol 69.75 33.53
CDX93484 Canola cytosol 35.19 33.33
CDX89141 Canola cytosol 33.33 33.13
CDY20676 Canola cytosol 34.57 32.75
CDY31068 Canola cytosol 34.57 32.75
CDX94953 Canola cytosol 34.57 32.56
CDY08484 Canola cytosol 37.04 30.0
CDY47907 Canola cytosol 36.42 29.5
CDY08481 Canola cytosol 36.42 29.5
CDX71957 Canola cytosol 33.95 28.8
CDY06041 Canola cytosol 33.33 28.42
CDX96035 Canola cytosol, peroxisome, plastid 27.78 28.3
CDY01904 Canola cytosol, peroxisome, plastid 27.78 28.3
CDX67744 Canola cytosol 33.95 27.36
CDX98295 Canola cytosol 30.86 25.77
CDY09876 Canola cytosol 27.78 25.71
CDX69566 Canola cytosol 27.16 24.44
CDY37513 Canola cytosol 25.31 23.84
CDY49062 Canola cytosol 25.31 23.43
Protein Annotations
EnsemblPlants:CDY55534EnsemblPlantsGene:GSBRNA2T00017008001Gene3D:3.40.50.620GO:A0A078IVK1GO:GO:0006950GO:GO:0008150
InterPro:IPR014729InterPro:Rossmann-like_a/b/a_foldInterPro:Universal_stress_UspAInterPro:UspAPANTHER:PTHR31964PANTHER:PTHR31964:SF106
PFAM:PF00582PRINTS:PR01438ProteinID:CDY55534ProteinID:CDY55534.1SUPFAM:SSF52402UniParc:UPI00015D989E
UniProt:A0A078IVK1MapMan:35.2::::
Description
BnaA04g29570DBnaA04g29570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVK1]
Coordinates
chrLK033411:+:53782..55046
Molecular Weight (calculated)
17503.3 Da
IEP (calculated)
7.108
GRAVY (calculated)
0.140
Length
162 amino acids
Sequence
(BLAST)
001: MATVEEKPLM VVGVDESEQS TYALEWTLDR FFAPYAPNFP FKLLIIHAKP NAVSAVGFAG PGIVEVVPHV DADLKHTAAK VVEKAKGICE SKSVHDATME
101: VFEGDARNIL CEVVDKHHAS LLVVGSHGHG AIKRAVIGSV SDYCAHHAHC SVMIVKKPKI KL
Best Arabidopsis Sequence Match ( AT2G47710.1 )
(BLAST)
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
Arabidopsis Description
Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O82240]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.