Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010544.1-P | Field mustard | nucleus | 92.91 | 92.91 |
| CDY35449 | Canola | nucleus | 93.7 | 90.84 |
| AT4G23770.1 | Thale cress | cytosol | 39.37 | 36.23 |
| AT4G23780.1 | Thale cress | nucleus | 38.58 | 28.49 |
Protein Annotations
| EnsemblPlants:CDY24801 | EnsemblPlantsGene:GSBRNA2T00027258001 | ProteinID:CDY24801 | ProteinID:CDY24801.1 | SEG:seg | UniParc:UPI0004EDCB3C |
| UniProt:A0A078GHE5 | MapMan:35.2 | : | : | : | : |
Description
BnaA08g15090DBnaA08g15090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHE5]
Coordinates
chrLK032164:+:247280..248197
Molecular Weight (calculated)
14116.3 Da
IEP (calculated)
4.084
GRAVY (calculated)
-0.639
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGENVSFA EHEVLKGKHE TLLREHETSI STIELLEKKL KEALLVEQKG EYWEKKYLEL LKKLETVENN IKDLMYSEVA GEDSGAATLG EDCKVVIVLS
101: DDDEGDGSES SGGDSDSENQ ENLSFYL
101: DDDEGDGSES SGGDSDSENQ ENLSFYL
001: MSSRLDQLVN KYNKSCENVS FAEHMILKDK YESLVIEHES LIKTLELLEK THGFTVEDLV TKQKEALEKK EVIEKWENKF GEMEKKLKTV ERSIEYIMSV
101: DVQTGVDSDM STSEDDDGNR RQRKGRLINS SDHDHFIL
101: DVQTGVDSDM STSEDDDGNR RQRKGRLINS SDHDHFIL
Arabidopsis Description
Uncharacterized protein At4g23770 [Source:UniProtKB/TrEMBL;Acc:Q84JI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.