Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24801 | Canola | nucleus | 90.84 | 93.7 |
| Bra010544.1-P | Field mustard | nucleus | 87.02 | 89.76 |
| AT4G23770.1 | Thale cress | cytosol | 38.17 | 36.23 |
| AT4G23780.1 | Thale cress | nucleus | 36.64 | 27.91 |
Protein Annotations
| EnsemblPlants:CDY35449 | EnsemblPlantsGene:GSBRNA2T00058456001 | ProteinID:CDY35449 | ProteinID:CDY35449.1 | SEG:seg | UniParc:UPI0004EEFA2B |
| UniProt:A0A078HDE3 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g62110DBnaC03g62110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDE3]
Coordinates
chrLK032352:-:75350..76313
Molecular Weight (calculated)
14366.5 Da
IEP (calculated)
4.004
GRAVY (calculated)
-0.551
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGESAVGES VSFAELEILK GKHETLSSEH ETSISTIELL EKKLKEALLV EQKGEYWEKK YLELLKKLET VENSIKDLMY SEVAGEDSGA AALGEDRKVV
101: IVLSDDDEGD GSESSGGDSD SENQENLSFY L
101: IVLSDDDEGD GSESSGGDSD SENQENLSFY L
001: MSSRLDQLVN KYNKSCENVS FAEHMILKDK YESLVIEHES LIKTLELLEK THGFTVEDLV TKQKEALEKK EVIEKWENKF GEMEKKLKTV ERSIEYIMSV
101: DVQTGVDSDM STSEDDDGNR RQRKGRLINS SDHDHFIL
101: DVQTGVDSDM STSEDDDGNR RQRKGRLINS SDHDHFIL
Arabidopsis Description
Uncharacterized protein At4g23770 [Source:UniProtKB/TrEMBL;Acc:Q84JI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.