Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G23770.1 | Thale cress | cytosol | 37.21 | 46.38 |
| CDY24801 | Canola | nucleus | 28.49 | 38.58 |
| CDY35449 | Canola | nucleus | 27.91 | 36.64 |
| Bra010544.1-P | Field mustard | nucleus | 26.74 | 36.22 |
Protein Annotations
| ArrayExpress:AT4G23780 | EnsemblPlants:AT4G23780.1 | EnsemblPlantsGene:AT4G23780 | EntrezGene:828478 | GO:GO:0003674 | GO:GO:0008150 |
| ncoils:Coil | ProteinID:AEE84805.2 | ProteinID:ANM67124.1 | ProteinID:OAO99584.1 | RefSeq:AT4G23780 | RefSeq:AT4G23780-TAIR-G |
| RefSeq:NP_001320051.1 | RefSeq:NP_001328973.1 | TAIR:AT4G23780 | TAIR:AT4G23780.1 | UniParc:UPI0007E01F68 | UniProt:A0A178V2I5 |
| UniProt:A0A1P8B6A7 | MapMan:35.2 | : | : | : | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23770.1); Has 51 Blast hits to 49 proteins in 22 species: Archae - 0; Bacteria - 9; Metazoa - 12; Fungi - 0; Plants - 14; Viruses - 2; Other Eukaryotes - 14 (sour /.../BI BLink). [Source:TAIR;Acc:AT4G23780]
Coordinates
chr4:-:12385944..12387182
Molecular Weight (calculated)
19866.2 Da
IEP (calculated)
4.628
GRAVY (calculated)
-1.001
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLGNQSEK NSNNKFSDNV PLAQHEIWKE KYESLVTEHE NLVKEHETLI KTLELIEKHE ITLEDLVKKK QREALVGKEE IEKFDKEIGE RKKMQEMLDK
101: DLEYLKSCEE TVMNGMSSGP SGARVADKRN VNKFESQEDV IEISDDDERT QSESNVGNCN SSHKNLEYSF IL
101: DLEYLKSCEE TVMNGMSSGP SGARVADKRN VNKFESQEDV IEISDDDERT QSESNVGNCN SSHKNLEYSF IL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.