Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 7
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54120.1 | CDY46076 | AT2G23420.1 | 21798944 |
| AT1G54120.1 | CDY63965 | AT2G23420.1 | 21798944 |
| AT1G54120.1 | CDX89363 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | CDX94372 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | CDY50005 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | CDY52429 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | CDY65997 | AT4G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037965.1-P | Field mustard | mitochondrion | 100.0 | 100.0 |
| CDY33089 | Canola | mitochondrion, plastid | 95.16 | 95.16 |
| AT1G54120.1 | Thale cress | plastid | 83.06 | 83.06 |
| CDY26144 | Canola | mitochondrion | 78.23 | 82.91 |
| CDY02481 | Canola | mitochondrion | 82.26 | 82.26 |
| CDY56627 | Canola | mitochondrion | 81.45 | 81.45 |
| CDY39092 | Canola | plastid | 58.87 | 61.86 |
| CDY33252 | Canola | plastid | 58.06 | 61.02 |
| PGSC0003DMT400012536 | Potato | plastid | 40.32 | 39.68 |
| PGSC0003DMT400011173 | Potato | plastid | 31.45 | 36.11 |
| KRH06198 | Soybean | cytosol, plastid | 37.9 | 35.88 |
| Solyc06g062930.1.1 | Tomato | nucleus, plastid | 36.29 | 35.71 |
| KRH47616 | Soybean | cytosol | 37.1 | 35.66 |
| VIT_09s0002g01060.t01 | Wine grape | cytosol, plastid | 37.1 | 34.85 |
| PGSC0003DMT400058990 | Potato | plastid | 29.84 | 29.13 |
Protein Annotations
| EnsemblPlants:CDY51400 | EnsemblPlantsGene:GSBRNA2T00003331001 | PANTHER:PTHR34788 | PANTHER:PTHR34788:SF1 | ProteinID:CDY51400 | ProteinID:CDY51400.1 |
| SEG:seg | UniParc:UPI000253E70B | UniProt:A0A078IK25 | MapMan:35.2 | : | : |
Description
BnaA06g01310DBnaA06g01310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK25]
Coordinates
chrLK032992:-:24220..24594
Molecular Weight (calculated)
14404.0 Da
IEP (calculated)
12.427
GRAVY (calculated)
-0.269
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRIAATSV FRWSRSRRKI HIRRRKSQVV RLGGNHNVVP RGGFSLKKMV RKMKLRWLRL HYVRLVKKIN GFYRNLVKEF LDAGAELEAI QKRMAVEAGS
101: FAVPGFGLSF ASMSVHDRAR HFLV
101: FAVPGFGLSF ASMSVHDRAR HFLV
001: MDQRIAAIPV FRWSRSRRKI HIRRRKSQVV RLGGKNSAVS RGGFSLKKMV RRMKLRWLKL HYVRVVKKIK VFYRNLVKEF VDAGAELEAI QQRMAVEAAA
101: FAVPGLGLSF SSFSVHDRAR YFLV
101: FAVPGLGLSF SSFSVHDRAR YFLV
Arabidopsis Description
F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.