Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g093290.2.1 | |
| Solyc03g044430.2.1 | |
| Solyc05g018810.2.1 | |
| Solyc12g008940.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012536 | Potato | plastid | 92.86 | 92.86 |
| VIT_09s0002g01060.t01 | Wine grape | cytosol, plastid | 46.83 | 44.7 |
| CDY56627 | Canola | mitochondrion | 37.3 | 37.9 |
| AT1G54120.1 | Thale cress | plastid | 36.51 | 37.1 |
| Bra030903.1-P | Field mustard | mitochondrion | 36.51 | 37.1 |
| CDY02481 | Canola | mitochondrion | 36.51 | 37.1 |
| KRH47616 | Soybean | cytosol | 37.3 | 36.43 |
| Bra037965.1-P | Field mustard | mitochondrion | 35.71 | 36.29 |
| CDY33089 | Canola | mitochondrion, plastid | 35.71 | 36.29 |
| CDY51400 | Canola | mitochondrion | 35.71 | 36.29 |
| CDY26144 | Canola | mitochondrion | 33.33 | 35.9 |
| KRH06198 | Soybean | cytosol, plastid | 37.3 | 35.88 |
| AT3G14060.1 | Thale cress | plastid | 34.92 | 35.2 |
| Bra021528.1-P | Field mustard | plastid | 32.54 | 34.75 |
| CDY39092 | Canola | plastid | 32.54 | 34.75 |
| CDY33252 | Canola | plastid | 31.75 | 33.9 |
Protein Annotations
| EnsemblPlants:Solyc06g062930.1.1 | EnsemblPlantsGene:Solyc06g062930.1 | PANTHER:PTHR34788 | PANTHER:PTHR34788:SF1 | SEG:seg | UniParc:UPI0002766B35 |
| UniProt:K4C724 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:39722677..39723057
Molecular Weight (calculated)
14607.9 Da
IEP (calculated)
11.777
GRAVY (calculated)
-0.663
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNPDNIVE KAHPTTVSRR GPLPRRKFSF RKKKLPTVRL GGGKNNNNRR RFSVAKLFRR VKLRWLKSQY TCLLKKMREY YQSAVKDIME NGGALDSFQQ
101: RLLLETSFAV PVMGLSFNTF PNHYGT
101: RLLLETSFAV PVMGLSFNTF PNHYGT
001: MDQRIAAIPV FRWSRSRRKI HIRRRKSQVV RLGGKNSAVS RGGFSLKKMV RRMKLRWLKL HYVRVVKKIK VFYRNLVKEF VDAGAELEAI QQRMAVEAAA
101: FAVPGLGLSF SSFSVHDRAR YFLV
101: FAVPGLGLSF SSFSVHDRAR YFLV
Arabidopsis Description
F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.