Factsheet for PGSC0003DMT400012536

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000751
PGSC0003DMT400010254
PGSC0003DMT400055114

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54120.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT1G54120.1	PGSC0003DMT400000751	AT4G26110.1	21798944
AT1G54120.1	PGSC0003DMT400055114	AT4G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062930.1.1	Tomato	nucleus, plastid	92.86	92.86
VIT_09s0002g01060.t01	Wine grape	cytosol, plastid	50.79	48.48
PGSC0003DMT400058990	Potato	plastid	46.03	45.67
PGSC0003DMT400011173	Potato	plastid	36.51	42.59
KRH47616	Soybean	cytosol	42.86	41.86
KRH06198	Soybean	cytosol, plastid	42.86	41.22
AT1G54120.1	Thale cress	plastid	40.48	41.13
Bra037965.1-P	Field mustard	mitochondrion	39.68	40.32
CDY33089	Canola	mitochondrion, plastid	39.68	40.32
CDY51400	Canola	mitochondrion	39.68	40.32
CDY56627	Canola	mitochondrion	39.68	40.32
Bra030903.1-P	Field mustard	mitochondrion	38.89	39.52
CDY02481	Canola	mitochondrion	38.89	39.52
CDY26144	Canola	mitochondrion	36.51	39.32
AT3G14060.1	Thale cress	plastid	38.89	39.2
CDY39092	Canola	plastid	36.51	38.98
Bra021528.1-P	Field mustard	plastid	36.51	38.98
CDY33252	Canola	plastid	35.71	38.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400012536	EnsemblPlantsGene:PGSC0003DMG400004890	EntrezGene:107062589	PANTHER:PTHR34788	PANTHER:PTHR34788:SF1	PGSC:PGSC0003DMG400004890
RefSeq:XP_015168888.1	SEG:seg	UniParc:UPI000294BE28	UniProt:M1A1D1	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004890]

Coordinates

chr6:+:48511335..48511941

Molecular Weight (calculated)

14692.1 Da

IEP (calculated)

12.013

GRAVY (calculated)

-0.503

Length

126 amino acids

Sequence
(BLAST)

001: MASNPANIVE KAHPTTVFRW GPLARRKFSF RRKKLPTVRL GGGKNNNNRR RFSVAKLFRR VKLRWLKLQY TCLLKKLREY YRSAVKDLME NGGALDSFQQ
101: RLLLETSFAV PVMGLSFNTF PNHYGT

Best Arabidopsis Sequence Match ( AT1G54120.1 )
(BLAST)

001: MDQRIAAIPV FRWSRSRRKI HIRRRKSQVV RLGGKNSAVS RGGFSLKKMV RRMKLRWLKL HYVRVVKKIK VFYRNLVKEF VDAGAELEAI QQRMAVEAAA
101: FAVPGLGLSF SSFSVHDRAR YFLV

Arabidopsis Description

F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.