Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0031g00460.t01 | |
| VIT_09s0002g02330.t01 | |
| VIT_11s0016g02050.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54120.1 | VIT_07s0031g00460.t01 | AT2G23420.1 | 21798944 |
| AT1G54120.1 | VIT_09s0002g02330.t01 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | VIT_11s0016g02050.t01 | AT4G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012536 | Potato | plastid | 48.48 | 50.79 |
| Solyc06g062930.1.1 | Tomato | nucleus, plastid | 44.7 | 46.83 |
| KRH06198 | Soybean | cytosol, plastid | 44.7 | 45.04 |
| KRH47616 | Soybean | cytosol | 43.94 | 44.96 |
| CDY26144 | Canola | mitochondrion | 37.88 | 42.73 |
| AT1G54120.1 | Thale cress | plastid | 38.64 | 41.13 |
| CDY39092 | Canola | plastid | 36.36 | 40.68 |
| Bra021528.1-P | Field mustard | plastid | 36.36 | 40.68 |
| AT3G14060.1 | Thale cress | plastid | 37.88 | 40.0 |
| CDY33252 | Canola | plastid | 35.61 | 39.83 |
| CDY56627 | Canola | mitochondrion | 35.61 | 37.9 |
| CDY02481 | Canola | mitochondrion | 34.85 | 37.1 |
| CDY51400 | Canola | mitochondrion | 34.85 | 37.1 |
| Bra037965.1-P | Field mustard | mitochondrion | 34.85 | 37.1 |
| Bra030903.1-P | Field mustard | mitochondrion | 34.85 | 37.1 |
| CDY33089 | Canola | mitochondrion, plastid | 34.09 | 36.29 |
| PGSC0003DMT400058990 | Potato | plastid | 34.85 | 36.22 |
| PGSC0003DMT400011173 | Potato | plastid | 28.79 | 35.19 |
Protein Annotations
| EntrezGene:100246433 | wikigene:100246433 | MapMan:35.2 | ProteinID:CCB59281 | ProteinID:CCB59281.1 | UniProt:F6HXV6 |
| EMBL:FN596494 | EntrezGene:LOC100246433 | wikigene:LOC100246433 | PANTHER:PTHR34788 | PANTHER:PTHR34788:SF1 | TIGR:TC66816 |
| UniParc:UPI0001983F4B | ArrayExpress:VIT_09s0002g01060 | EnsemblPlantsGene:VIT_09s0002g01060 | EnsemblPlants:VIT_09s0002g01060.t01 | unigene:Vvi.15245 | RefSeq:XP_002272652 |
| RefSeq:XP_002272652.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:777669..778208
Molecular Weight (calculated)
15012.5 Da
IEP (calculated)
12.240
GRAVY (calculated)
-0.470
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDHEAPSK PQGSSAPRWD SRRKRSFPRR KRLPVIRLGG GPAAAKQRRG PSLVRLMRRI KLRWLKLRYF FTLKKLKQYY RSMVKDFVEA GATLETFQQR
101: ILMETSFAVP VLGVSFSTYP SAAGGAGAGR LW
101: ILMETSFAVP VLGVSFSTYP SAAGGAGAGR LW
001: MDQRIAAIPV FRWSRSRRKI HIRRRKSQVV RLGGKNSAVS RGGFSLKKMV RRMKLRWLKL HYVRVVKKIK VFYRNLVKEF VDAGAELEAI QQRMAVEAAA
101: FAVPGLGLSF SSFSVHDRAR YFLV
101: FAVPGLGLSF SSFSVHDRAR YFLV
Arabidopsis Description
F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.