Factsheet for VIT_11s0016g02050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06030.t01
VIT_09s0002g02330.t01
VIT_11s0016g02050.t01
VIT_11s0149g00220.t01
VIT_11s0149g00240.t01
VIT_14s0083g00970.t01
VIT_15s0046g02920.t01
VIT_16s0039g02160.t01
VIT_16s0115g00080.t01
VIT_16s0115g00310.t01
VIT_17s0000g05090.t01
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19480.1	VIT_16s0039g02160.t01	AT1G08580.1	21798944
AT2G19480.1	VIT_17s0000g07580.t01	AT1G19050.1	18642946
AT2G19480.1	VIT_09s0002g02330.t01	AT2G19480.1	19228338
AT2G19480.1	VIT_11s0016g02050.t01	AT2G19480.1	19228338
AT2G19480.1	VIT_15s0046g02920.t01	AT2G45860.1	21798944
AT2G19480.1	VIT_09s0002g02330.t01	AT4G26110.1	19228338
AT2G19480.1	VIT_11s0016g02050.t01	AT4G26110.1	19228338
AT2G19480.1	VIT_09s0002g02330.t01	AT5G56950.1	19228338
AT2G19480.1	VIT_11s0016g02050.t01	AT5G56950.1	19228338
AT4G26110.1	VIT_09s0002g02330.t01	AT2G19480.1	19228338
AT4G26110.1	VIT_11s0016g02050.t01	AT2G19480.1	19228338
AT4G26110.1	VIT_09s0002g02330.t01	AT2G19480.1	21798944
AT4G26110.1	VIT_11s0016g02050.t01	AT2G19480.1	21798944
AT4G26110.1	VIT_16s0115g00080.t01	AT2G24090.1	21798944
AT4G26110.1	VIT_16s0115g00310.t01	AT2G24090.1	21798944
AT4G26110.1	VIT_15s0046g02920.t01	AT2G45860.1	21798944
AT4G26110.1	VIT_04s0008g06030.t01	AT3G02190.1	21798944
AT4G26110.1	VIT_11s0149g00220.t01	AT3G02190.1	21798944
AT4G26110.1	VIT_11s0149g00240.t01	AT3G02190.1	21798944
AT4G26110.1	VIT_09s0002g02330.t01	AT4G26110.1	19228338
AT4G26110.1	VIT_11s0016g02050.t01	AT4G26110.1	19228338
AT4G26110.1	VIT_09s0002g02330.t01	AT4G26110.1	21798944
AT4G26110.1	VIT_11s0016g02050.t01	AT4G26110.1	21798944
AT4G26110.1	VIT_09s0002g02330.t01	AT5G56950.1	21798944
AT4G26110.1	VIT_11s0016g02050.t01	AT5G56950.1	21798944
AT4G26110.1	VIT_17s0000g05090.t01	AT5G60960.1	21297037
AT5G56950.1	VIT_09s0002g02330.t01	AT2G19480.1	19228338
AT5G56950.1	VIT_11s0016g02050.t01	AT2G19480.1	19228338
AT5G56950.1	VIT_09s0002g02330.t01	AT2G19480.1	19825649
AT5G56950.1	VIT_11s0016g02050.t01	AT2G19480.1	19825649
AT5G56950.1	VIT_15s0046g02920.t01	AT2G45860.1	21798944
AT5G56950.1	VIT_14s0083g00970.t01	AT2G47610.1	21798944
AT5G56950.1	VIT_04s0008g06030.t01	AT3G02190.1	21798944
AT5G56950.1	VIT_11s0149g00220.t01	AT3G02190.1	21798944
AT5G56950.1	VIT_11s0149g00240.t01	AT3G02190.1	21798944
AT5G56950.1	VIT_09s0002g02330.t01	AT4G26110.1	19228338
AT5G56950.1	VIT_11s0016g02050.t01	AT4G26110.1	19228338
AT5G56950.1	VIT_09s0002g02330.t01	AT5G56950.1	19228338
AT5G56950.1	VIT_11s0016g02050.t01	AT5G56950.1	19228338
AT5G56950.1	VIT_09s0002g02330.t01	AT5G56950.1	19825649
AT5G56950.1	VIT_11s0016g02050.t01	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g02330.t01	Wine grape	nucleus	81.09	82.15
KRH12415	Soybean	endoplasmic reticulum	74.09	78.79
Solyc12g008940.1.1	Tomato	nucleus	76.17	78.61
PGSC0003DMT400006378	Potato	nucleus	51.04	78.49
KRH37411	Soybean	nucleus	73.32	77.53
Solyc03g121700.2.1	Tomato	nucleus	74.61	77.42
PGSC0003DMT400000751	Potato	nucleus	73.83	77.03
KRH23302	Soybean	nucleus	66.06	76.58
KRH19202	Soybean	nucleus	73.83	76.0
PGSC0003DMT400055114	Potato	nucleus	73.58	75.94
GSMUA_Achr7P09020_001	Banana	nucleus	72.54	75.47
KRH02690	Soybean	nucleus	73.83	75.2
CDY50468	Canola	nucleus	73.58	75.13
CDY21663	Canola	nucleus	67.88	75.07
AT2G19480.1	Thale cress	nucleus	73.32	74.67
Bra036720.1-P	Field mustard	nucleus	71.24	74.53
Bra040674.1-P	Field mustard	nucleus	72.54	74.47
CDY50472	Canola	nucleus	72.02	74.33
AT5G56950.1	Thale cress	nucleus	72.02	74.33
Os05t0539700-01	Rice	nucleus	69.95	74.18
CDY67089	Canola	nucleus	71.76	73.87
Os06t0149400-01	Rice	nucleus	72.28	73.81
Zm00001d045352_P002	Maize	extracellular, mitochondrion	72.54	73.68
CDY69405	Canola	nucleus	70.98	73.66
CDY60738	Canola	nucleus	72.8	73.56
TraesCS1B01G377000.1	Wheat	nucleus	68.39	73.54
GSMUA_Achr6P00890_001	Banana	nucleus	70.47	73.51
KRH10020	Soybean	nucleus	69.69	73.5
Solyc05g018810.2.1	Tomato	nucleus	71.5	73.4
Os01t0711800-00	Rice	nucleus	56.48	73.4
TraesCS1D01G364900.1	Wheat	nucleus	69.17	72.95
OQU75826	Sorghum	nucleus	71.76	72.7
CDX82688	Canola	nucleus	71.24	72.37
AT4G26110.1	Thale cress	nucleus	69.43	72.04
KXG22431	Sorghum	nucleus	69.69	71.93
Os06t0611700-00	Rice	nucleus	48.96	71.86
Zm00001d038851_P001	Maize	extracellular, mitochondrion	68.65	71.62
CDX89363	Canola	nucleus	67.88	71.58
TraesCS7D01G096300.1	Wheat	nucleus	70.73	71.47
Bra013951.1-P	Field mustard	nucleus	67.62	71.31
TraesCS4A01G401100.1	Wheat	nucleus	70.21	70.94
CDY50005	Canola	nucleus	64.25	70.66
TraesCS7A01G102400.1	Wheat	nucleus	69.95	70.5
GSMUA_AchrUn_...	Banana	nucleus	63.99	69.97
CDX94372	Canola	nucleus	66.32	69.75
Zm00001d036177_P001	Maize	nucleus	66.32	69.75
CDY50473	Canola	nucleus	33.94	69.68
Bra031083.1-P	Field mustard	nucleus	68.39	69.66
HORVU7Hr1G111180.1	Barley	cytosol	8.29	68.09
HORVU1Hr1G048890.1	Barley	nucleus	33.42	67.89
TraesCS1A01G360500.1	Wheat	nucleus	69.17	67.25
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	70.21	66.75
Os05t0235600-00	Rice	nucleus	21.5	66.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum	70.73	64.24
HORVU1Hr1G080060.11	Barley	nucleus, plastid	66.84	62.62
Bra006957.1-P	Field mustard	nucleus	36.79	62.56
PGSC0003DMT400012517	Potato	nucleus	56.22	62.18
CDX97517	Canola	nucleus	43.78	61.23
Bra027399.1-P	Field mustard	nucleus	43.78	61.23
PGSC0003DMT400021185	Potato	nucleus	51.04	60.24
Bra002778.1-P	Field mustard	nucleus	64.51	60.0
CDY65997	Canola	nucleus	13.21	60.0
CDY23642	Canola	nucleus	45.6	59.86
Solyc08g063000.2.1	Tomato	nucleus	54.15	59.38
Solyc06g062690.2.1	Tomato	nucleus	52.59	58.17
AT3G13782.2	Thale cress	cytosol	47.41	57.73
HORVU7Hr1G064820.1	Barley	nucleus	12.18	55.29
HORVU7Hr1G064790.1	Barley	nucleus	12.18	55.29
Zm00001d011130_P002	Maize	nucleus	57.51	52.48
HORVU2Hr1G066940.1	Barley	nucleus	11.14	51.81
HORVU1Hr1G018340.1	Barley	cytosol	3.63	48.28
TraesCS3A01G357000.1	Wheat	mitochondrion	30.57	47.77
HORVU4Hr1G081230.2	Barley	nucleus	12.44	46.15
CDY52429	Canola	nucleus	31.35	40.88
VIT_17s0000g06030.t01	Wine grape	cytosol	21.5	30.97
VIT_14s0108g00510.t01	Wine grape	cytosol	17.88	28.05
HORVU2Hr1G033000.1	Barley	cytosol	13.99	22.22

Protein Annotations

EntrezGene:100267878	wikigene:100267878	MapMan:12.2.6	Gene3D:3.30.1120.90	ProteinID:CBI27898	ProteinID:CBI27898.3
ncoils:Coil	UniProt:D7TB63	EMBL:FN595756	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100267878
wikigene:LOC100267878	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98
SUPFAM:SSF143113	UniParc:UPI0001BE2EF4	ArrayExpress:VIT_11s0016g02050	EnsemblPlantsGene:VIT_11s0016g02050	EnsemblPlants:VIT_11s0016g02050.t01	RefSeq:XP_002281573
RefSeq:XP_002281573.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1642169..1646284

Molecular Weight (calculated)

44117.7 Da

IEP (calculated)

4.086

GRAVY (calculated)

-0.953

Length

386 amino acids

Sequence
(BLAST)

001: MSNSKETFNM ADLGSSLPGA VAALNAEDRA DLVNALKNKL QNLAGQHSDV LENLTPKVRK RVETLREIQA LVNYYNLKVL QVSGQHDELE AKFFEERAAL
101: EAKYQKLYQP LYSKRYDIVN GVVEVDGVTN EVTMDQEDKA EEKGVPDFWL TAMKTNEVLA EEISERDEGA LKYIKDIKWC RIDNPKGFKL EFFFDTNPYF
201: KNSVLTKTYH MIDEDEPILE KAIGTEIEWF PGKCLTQKLL KKKPRKGSKN AKPITKTESC ESFFNFFSPP QVPEDDEDID EDTAEELQNQ MEQDYDIGST
301: IRDKIIPHAV SWFTGEAAQG DEFGDMEDDE DEDIDEDDDE DEDEEEDDEE DDDEDEEDSK AVKKKSGRAQ VGDGQQGERP PECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.