Factsheet for GSMUA_Achr2P16760_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09020_001	Banana	nucleus	77.34	84.64
GSMUA_Achr6P00890_001	Banana	nucleus	75.12	82.43
GSMUA_Achr10P...	Banana	endoplasmic reticulum	79.31	75.76
PGSC0003DMT400006378	Potato	nucleus	46.8	75.7
VIT_09s0002g02330.t01	Wine grape	nucleus	68.97	73.49
Os06t0149400-01	Rice	nucleus	67.98	73.02
KRH23302	Soybean	nucleus	59.85	72.97
Solyc03g121700.2.1	Tomato	nucleus	66.5	72.58
Zm00001d045352_P002	Maize	extracellular, mitochondrion	66.5	71.05
KRH10020	Soybean	nucleus	64.04	71.04
VIT_11s0016g02050.t01	Wine grape	nucleus	66.75	70.21
OQU75826	Sorghum	nucleus	65.76	70.08
HORVU1Hr1G048890.1	Barley	nucleus	32.76	70.0
TraesCS7D01G096300.1	Wheat	nucleus	65.52	69.63
TraesCS4A01G401100.1	Wheat	nucleus	65.27	69.37
Zm00001d036177_P001	Maize	nucleus	62.32	68.94
TraesCS7A01G102400.1	Wheat	nucleus	64.78	68.67
GSMUA_AchrUn_...	Banana	nucleus	57.39	66.01
CDX97517	Canola	nucleus	41.38	60.87
Bra027399.1-P	Field mustard	nucleus	41.13	60.51
CDY23642	Canola	nucleus	43.35	59.86
AT3G13782.2	Thale cress	cytosol	44.09	56.47
HORVU7Hr1G064820.1	Barley	nucleus	11.58	55.29
HORVU7Hr1G064790.1	Barley	nucleus	11.58	55.29
HORVU2Hr1G066940.1	Barley	nucleus	10.59	51.81
TraesCS3A01G357000.1	Wheat	mitochondrion	30.79	50.61
HORVU4Hr1G081230.2	Barley	nucleus	11.58	45.19
GSMUA_Achr10P...	Banana	nucleus	18.47	29.18
GSMUA_Achr6P10690_001	Banana	nucleus	17.98	28.63
GSMUA_Achr4P00490_001	Banana	cytosol	17.73	28.12
GSMUA_Achr7P21000_001	Banana	cytosol	16.75	26.98
HORVU2Hr1G033000.1	Barley	cytosol	13.79	23.05

Protein Annotations

EnsemblPlants:GSMUA_Achr2P16760_001	EnsemblPlants:GSMUA_Achr2T16760_001	EnsemblPlantsGene:GSMUA_Achr2G16760_001	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:NAP-like_sf	InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	PFAM:PF00956
SEG:seg	SUPFAM:SSF143113	UniParc:UPI000295466D	UniProt:M0S8L7	MapMan:12.2.6	:

Description

NAP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G16760_001]

Coordinates

chr2:-:17526971..17531979

Molecular Weight (calculated)

46545.8 Da

IEP (calculated)

4.221

GRAVY (calculated)

-0.988

Length

406 amino acids

Sequence
(BLAST)

001: MYLVSPRVTP LEPTRTPRRR VFPCELLISR RKAAEGAAMS NDKQQESLNL AALSEEDRAG LVNALKDKLQ SLAGKHADVL ETLSPVVRKR VEVLRDIQSQ
101: HDELEAKFSE ERAVLEAKYQ KLYEPLYTKR YDIVNGVVEV EGLKYESSNE IPAEDRTTEE KGVPGFWLTA MKTNEVLTEE IQERDEEALK YLKDIKWCRI
201: DDPKGFKLEF FFDTNPYFKN AVLTKTYHMI DEDEPILEKA IGTEIEWLPG KCLTQKILKK KPKKGSKNAK PITKTEDCES FFNFFNPPQV PDDDADIDED
301: TAEQLQSQME ADYDIGSTIR DKIIPHAVSW FTGEAVEDDD ELEIEGEEDG EGEDEDDEDD EEEDDEEDED EDEDEEERGK SKKKSSIGQK KSRGDQGDRP
401: AECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.