Factsheet for TraesCS3A01G357000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G064820.1	Barley	nucleus	16.19	47.06
HORVU7Hr1G064790.1	Barley	nucleus	16.19	47.06
HORVU2Hr1G066940.1	Barley	nucleus	14.98	44.58
HORVU1Hr1G048890.1	Barley	nucleus	31.17	40.53
HORVU4Hr1G081230.2	Barley	nucleus	16.6	39.42
OQU75826	Sorghum	nucleus	55.06	35.7
TraesCS7A01G102400.1	Wheat	nucleus	54.66	35.25
TraesCS4A01G401100.1	Wheat	nucleus	54.25	35.08
Zm00001d036177_P001	Maize	nucleus	51.01	34.33
Zm00001d045352_P002	Maize	extracellular, mitochondrion	52.23	33.95
Os06t0149400-01	Rice	nucleus	51.01	33.33
KRH23302	Soybean	nucleus	44.13	32.73
VIT_09s0002g02330.t01	Wine grape	nucleus	50.2	32.55
GSMUA_Achr6P00890_001	Banana	nucleus	48.18	32.16
GSMUA_Achr7P09020_001	Banana	nucleus	48.18	32.08
Solyc03g121700.2.1	Tomato	nucleus	46.96	31.18
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	50.61	30.79
VIT_11s0016g02050.t01	Wine grape	nucleus	47.77	30.57
KRH10020	Soybean	nucleus	44.53	30.05
GSMUA_Achr10P...	Banana	endoplasmic reticulum	48.99	28.47
TraesCS1A01G360500.1	Wheat	nucleus	44.94	27.96
CDY23642	Canola	nucleus	32.79	27.55
Bra027399.1-P	Field mustard	nucleus	30.77	27.54
CDX97517	Canola	nucleus	30.36	27.17
AT3G13782.2	Thale cress	cytosol	33.6	26.18
PGSC0003DMT400006378	Potato	nucleus	23.48	23.11
HORVU2Hr1G033000.1	Barley	cytosol	13.77	13.99
TraesCS6A01G202200.1	Wheat	nucleus	14.17	13.94
TraesCS2A01G344900.1	Wheat	cytosol	13.77	13.44

Protein Annotations

MapMan:15.5.32	Gene3D:3.30.1120.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:NAP-like_sf
InterPro:NAP_family	PFAM:PF00010	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF99	SUPFAM:SSF143113
SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS3A01G357000	EnsemblPlants:TraesCS3A01G357000.1	InterPro:bHLH_dom	TIGR:cd00083	SEG:seg

Description

No Description!

Coordinates

chr3A:-:604999612..605001990

Molecular Weight (calculated)

28322.0 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.391

Length

247 amino acids

Sequence
(BLAST)

001: MPISVRFRHA WSLCVRAVMD KLQSLSGQHA DVLESLSPNV RTRVEFLRGI QSQHDEIEAK FFEERAALEA KYRKLYEPLY AKTYDIVHCK WSCGAKGVPD
101: FWLIALKTNE VMTEEIQERD KPVLKYLKDI KWSRIDDPKG FKLLTARAAA ESGSKRTCAA ELHNLSDKVV SRFPVVNRFS AILALFSRLL IACLLDWGAA
201: AEEQDQREDE GVAEPDTQFQ QGRHHKTNKA SMLDEAIEYL KQLQLQV

Best Arabidopsis Sequence Match ( AT2G19480.1 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.