Factsheet for TraesCS1A01G360500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G364900.1	Wheat	nucleus	92.19	100.0
HORVU7Hr1G111180.1	Barley	cytosol	11.84	100.0
TraesCS1B01G377000.1	Wheat	nucleus	88.67	98.05
Os05t0539700-01	Rice	nucleus	81.86	89.29
Zm00001d038851_P001	Maize	extracellular, mitochondrion	77.33	82.97
KXG22431	Sorghum	nucleus	77.08	81.82
VIT_09s0002g02330.t01	Wine grape	nucleus	67.25	70.08
KRH23302	Soybean	nucleus	58.44	69.67
VIT_11s0016g02050.t01	Wine grape	nucleus	67.25	69.17
Solyc03g121700.2.1	Tomato	nucleus	64.23	68.55
PGSC0003DMT400006378	Potato	nucleus	42.82	67.73
TraesCS4A01G401100.1	Wheat	nucleus	63.73	66.23
KRH10020	Soybean	nucleus	60.96	66.12
TraesCS7A01G102400.1	Wheat	nucleus	63.22	65.54
GSMUA_AchrUn_...	Banana	nucleus	57.93	65.16
Zm00001d011130_P002	Maize	nucleus	64.23	60.28
CDX97517	Canola	nucleus	40.05	57.61
Bra027399.1-P	Field mustard	nucleus	40.05	57.61
CDY23642	Canola	nucleus	41.81	56.46
AT3G13782.2	Thale cress	cytosol	42.82	53.63
TraesCS3A01G357000.1	Wheat	mitochondrion	27.96	44.94
TraesCS2A01G344900.1	Wheat	cytosol	16.37	25.69
TraesCS6A01G202200.1	Wheat	nucleus	15.62	24.7

Protein Annotations

EnsemblPlants:TraesCS1A01G360500.1	EnsemblPlantsGene:TraesCS1A01G360500	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	PFAM:PF00956	SEG:seg	SUPFAM:SSF143113
MapMan:12.2.6	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:541633003..541635882

Molecular Weight (calculated)

44644.1 Da

IEP (calculated)

4.091

GRAVY (calculated)

-0.910

Length

397 amino acids

Sequence
(BLAST)

001: MSDGKDTLDL SALGAAVPNA AGSFAPPPLP LAAVAVDGLR GLIGFAGGGF DAELSAEDKA NLVESIKNTL QGLAARHTDV LESLEPKVRK RVEALREIQS
101: QHDEFEAKFF EERAALEAKY QKMYEPLYSK RHDVVNGVVE AEGVTKDSGE AAPDEKEEKG VPDFWLNAMK NHEILAEEIQ ERDEEALKYL KDIKWYRITE
201: PKGFKLEFHF NTNPFFKNEV LSKTYHMIDE DEPILEKAIG TEIEWYPGKS LTQKVLKKKP KKGSKNTKPI TKIENCESFF NFFSPPQVPD DDEEIDEDTA
301: EQLQNQMEQD YDIGSTIRDK IIPHAVSWFT GEAAQDEDFD GIMDDDEDDD EDDEEDEDED EDDEEDEDDD DGDKKKGGRV PAGEGQAGER PAECKQQ

Best Arabidopsis Sequence Match ( AT5G56950.1 )
(BLAST)

001: MSNDKDSFNV SDLTSALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE IQGKHDEIET KFREERAALE AKYQKLYQPL YNKRYEIVNG
101: ATEVEGAPED AKMDQGDEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALIYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFNP PQVPDDDEDI DEERAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEFEIDNDD EDDIDEDEDE DEEDEDEDEE EDDEDEEEEV SKTKKKPSVL HKKGGRPQVT DDQQGERPPE CKQQ

Arabidopsis Description

NAP1;3Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.