Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121700.2.1 | Tomato | nucleus | 94.42 | 63.71 |
| Os05t0235600-00 | Rice | nucleus | 27.09 | 54.4 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 79.28 | 52.23 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 78.49 | 51.04 |
| GSMUA_Achr7P09020_001 | Banana | nucleus | 74.5 | 50.4 |
| PGSC0003DMT400055114 | Potato | nucleus | 74.9 | 50.27 |
| PGSC0003DMT400000751 | Potato | nucleus | 72.91 | 49.46 |
| GSMUA_Achr6P00890_001 | Banana | nucleus | 71.31 | 48.38 |
| Os05t0539700-01 | Rice | nucleus | 70.12 | 48.35 |
| TraesCS1B01G377000.1 | Wheat | nucleus | 68.13 | 47.63 |
| KXG22431 | Sorghum | nucleus | 70.12 | 47.06 |
| Zm00001d038851_P001 | Maize | extracellular, mitochondrion | 69.32 | 47.03 |
| Os01t0711800-00 | Rice | nucleus | 55.38 | 46.8 |
| GSMUA_Achr2P16760_001 | Banana | mitochondrion, nucleus | 75.7 | 46.8 |
| OQU75826 | Sorghum | nucleus | 70.52 | 46.46 |
| TraesCS1D01G364900.1 | Wheat | nucleus | 67.73 | 46.45 |
| HORVU1Hr1G048890.1 | Barley | nucleus | 35.06 | 46.32 |
| TraesCS7A01G102400.1 | Wheat | nucleus | 69.32 | 45.43 |
| TraesCS7D01G096300.1 | Wheat | nucleus | 68.92 | 45.29 |
| Zm00001d045352_P002 | Maize | extracellular, mitochondrion | 68.53 | 45.26 |
| Os06t0149400-01 | Rice | nucleus | 67.73 | 44.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.95 | 44.76 |
| TraesCS4A01G401100.1 | Wheat | nucleus | 67.73 | 44.5 |
| Os06t0611700-00 | Rice | nucleus | 46.61 | 44.49 |
| Zm00001d036177_P001 | Maize | nucleus | 64.14 | 43.87 |
| TraesCS1A01G360500.1 | Wheat | nucleus | 67.73 | 42.82 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 72.11 | 42.59 |
| PGSC0003DMT400012517 | Potato | nucleus | 58.17 | 41.83 |
| PGSC0003DMT400021185 | Potato | nucleus | 54.18 | 41.59 |
| HORVU1Hr1G080060.11 | Barley | nucleus, plastid | 65.74 | 40.05 |
| Zm00001d011130_P002 | Maize | nucleus | 53.39 | 31.68 |
| TraesCS3A01G357000.1 | Wheat | mitochondrion | 23.11 | 23.48 |
| PGSC0003DMT400083149 | Potato | cytosol | 23.11 | 22.22 |
| PGSC0003DMT400056432 | Potato | cytosol | 17.13 | 20.57 |
| PGSC0003DMT400017852 | Potato | cytosol | 20.32 | 20.0 |
| PGSC0003DMT400050243 | Potato | nucleus | 17.93 | 15.85 |
| PGSC0003DMT400037682 | Potato | nucleus | 17.93 | 15.85 |
| HORVU7Hr1G064820.1 | Barley | nucleus | 3.98 | 11.76 |
| HORVU7Hr1G064790.1 | Barley | nucleus | 3.98 | 11.76 |
| HORVU2Hr1G066940.1 | Barley | nucleus | 3.19 | 9.64 |
| HORVU4Hr1G081230.2 | Barley | nucleus | 3.59 | 8.65 |
| HORVU2Hr1G033000.1 | Barley | cytosol | 1.99 | 2.06 |
| HORVU7Hr1G111180.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006378 | EnsemblPlantsGene:PGSC0003DMG400002493 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:NAP-like_sf |
| InterPro:NAP_family | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF98 | PFAM:PF00956 | PGSC:PGSC0003DMG400002493 | SEG:seg |
| SUPFAM:SSF143113 | UniParc:UPI000295A224 | UniProt:M0ZR87 | MapMan:12.2.6 | : | : |
Description
Nucleosome assembly protein 1 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400002493]
Coordinates
chr3:-:60982219..60988477
Molecular Weight (calculated)
29010.9 Da
IEP (calculated)
3.968
GRAVY (calculated)
-1.171
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQGEDSETE NEKGVPNFWL TAMKTNEILA EEISERDEEA LKYLKDIKWC KLDDRKGFKL EFFFDTNPFF KNSVLTKTYH MIDDDDDPIL EKAIGTNIEW
101: YPGKCLTQKI LKRKPKKGSK NAKFVIKTES CESFFNFFNP PQVPEDDDDD IDEDAAEDLQ NLMEQDYDIG STIRAKIIPH AVSWFTGEAA EGDEFEDIEG
201: DDEDEDEDEE EDDDEDEDED EEEEKSKKKK SAKAQAGEGQ QGERPPECKQ Q
101: YPGKCLTQKI LKRKPKKGSK NAKFVIKTES CESFFNFFNP PQVPEDDDDD IDEDAAEDLQ NLMEQDYDIG STIRAKIIPH AVSWFTGEAA EGDEFEDIEG
201: DDEDEDEDEE EDDDEDEDED EEEEKSKKKK SAKAQAGEGQ QGERPPECKQ Q
001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KKAGRSQLAE GQAGERPPEC KQQ
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KKAGRSQLAE GQAGERPPEC KQQ
Arabidopsis Description
NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.