Factsheet for Zm00001d045352_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75826	Sorghum	nucleus	92.89	92.65
Zm00001d036177_P001	Maize	nucleus	85.26	88.28
Os06t0149400-01	Rice	nucleus	84.21	84.66
TraesCS7A01G102400.1	Wheat	nucleus	82.11	81.46
TraesCS7D01G096300.1	Wheat	nucleus	81.84	81.41
TraesCS4A01G401100.1	Wheat	nucleus	81.32	80.89
HORVU1Hr1G048890.1	Barley	nucleus	39.74	79.47
KRH23302	Soybean	nucleus	65.26	74.47
GSMUA_Achr7P09020_001	Banana	nucleus	71.58	73.32
GSMUA_Achr6P00890_001	Banana	nucleus	70.79	72.7
VIT_11s0016g02050.t01	Wine grape	nucleus	73.68	72.54
VIT_09s0002g02330.t01	Wine grape	nucleus	72.37	72.18
Solyc03g121700.2.1	Tomato	nucleus	69.21	70.7
KRH10020	Soybean	nucleus	66.58	69.13
PGSC0003DMT400006378	Potato	nucleus	45.26	68.53
HORVU7Hr1G064790.1	Barley	nucleus	15.26	68.24
HORVU7Hr1G064820.1	Barley	nucleus	15.26	68.24
Zm00001d038851_P001	Maize	extracellular, mitochondrion	65.0	66.76
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	71.05	66.5
GSMUA_Achr10P...	Banana	endoplasmic reticulum	71.32	63.76
CDX97517	Canola	nucleus	42.37	58.33
Bra027399.1-P	Field mustard	nucleus	42.11	57.97
CDY23642	Canola	nucleus	43.95	56.8
AT3G13782.2	Thale cress	cytosol	46.05	55.2
HORVU2Hr1G066940.1	Barley	nucleus	11.84	54.22
HORVU4Hr1G081230.2	Barley	nucleus	14.74	53.85
TraesCS3A01G357000.1	Wheat	mitochondrion	33.95	52.23
Zm00001d011130_P002	Maize	nucleus	55.0	49.41
Zm00001d050874_P001	Maize	extracellular	19.47	29.48
Zm00001d016935_P001	Maize	extracellular	19.47	28.68
HORVU2Hr1G033000.1	Barley	cytosol	14.47	22.63

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	EntrezGene:542113	ProteinID:AQL02107.1	EMBL:AY232823	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98
UniProt:Q84UX6	SUPFAM:SSF143113	UniParc:UPI0000183C79	EnsemblPlantsGene:Zm00001d045352	EnsemblPlants:Zm00001d045352_P002	EnsemblPlants:Zm00001d045352_T002
SEG:seg	:	:	:	:	:

Description

Nucleosome assembly protein 1;2

Coordinates

chr9:-:19291300..19295423

Molecular Weight (calculated)

43094.9 Da

IEP (calculated)

4.061

GRAVY (calculated)

-1.037

Length

380 amino acids

Sequence
(BLAST)

001: MGGEKETFDT SDLNASLPAA AAALSAEDRA GLVNALKDKL QSLAGQHADV LETLSPNVRK RVEFLREIQS QHDEIEAKFF EERAALEAKY QKLYEPLYTK
101: RYGIVNGEVE VDGVCDEPAS ENTVEGKEPD AKGVPDFWLT AMKTNEVLSE EIQERDEAAL KYLKDIKWSR IEDPKGFKLD FFFDTNPFFK NSVLTKTYHM
201: VDEDDPILEK AIGTEIEWYP GKNLTQKILK KKPKKGSKNT KPITKTEDCE SFFNFFNPPQ VPEDDDDIDE DTADELQSQM EHDYDIGTTI RDKIIPHAVS
301: WFTGEAVQGE DFGELGDDDE DDDDEDDDED DEDEEEDDDE EEDDEEESKP ARKSGSGRRH KAPQKVSQGN AEQPAECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.1 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.