Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G096300.1 | Wheat | nucleus | 96.08 | 96.34 |
| TraesCS4A01G401100.1 | Wheat | nucleus | 95.04 | 95.29 |
| Os06t0149400-01 | Rice | nucleus | 85.38 | 86.51 |
| HORVU1Hr1G048890.1 | Barley | nucleus | 42.3 | 85.26 |
| OQU75826 | Sorghum | nucleus | 83.55 | 83.99 |
| Zm00001d045352_P002 | Maize | extracellular, mitochondrion | 81.46 | 82.11 |
| Zm00001d036177_P001 | Maize | nucleus | 76.24 | 79.56 |
| HORVU7Hr1G064820.1 | Barley | nucleus | 16.97 | 76.47 |
| HORVU7Hr1G064790.1 | Barley | nucleus | 16.97 | 76.47 |
| GSMUA_Achr7P09020_001 | Banana | nucleus | 69.97 | 72.24 |
| GSMUA_Achr6P00890_001 | Banana | nucleus | 69.19 | 71.62 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 71.02 | 71.39 |
| KRH23302 | Soybean | nucleus | 61.88 | 71.17 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 70.5 | 69.95 |
| PGSC0003DMT400006378 | Potato | nucleus | 45.43 | 69.32 |
| Solyc03g121700.2.1 | Tomato | nucleus | 67.1 | 69.09 |
| KRH10020 | Soybean | nucleus | 65.01 | 68.03 |
| GSMUA_Achr2P16760_001 | Banana | mitochondrion, nucleus | 68.67 | 64.78 |
| TraesCS1A01G360500.1 | Wheat | nucleus | 65.54 | 63.22 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 69.45 | 62.59 |
| HORVU4Hr1G081230.2 | Barley | nucleus | 16.71 | 61.54 |
| HORVU2Hr1G066940.1 | Barley | nucleus | 12.27 | 56.63 |
| CDX97517 | Canola | nucleus | 40.21 | 55.8 |
| Bra027399.1-P | Field mustard | nucleus | 39.95 | 55.43 |
| TraesCS3A01G357000.1 | Wheat | mitochondrion | 35.25 | 54.66 |
| CDY23642 | Canola | nucleus | 41.78 | 54.42 |
| AT3G13782.2 | Thale cress | cytosol | 44.13 | 53.31 |
| TraesCS6A01G202200.1 | Wheat | nucleus | 18.8 | 28.69 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 17.49 | 26.48 |
| HORVU2Hr1G033000.1 | Barley | cytosol | 14.36 | 22.63 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G102400.1 | EnsemblPlantsGene:TraesCS7A01G102400 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:NAP-like_sf |
| InterPro:NAP_family | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF98 | PFAM:PF00956 | SEG:seg | SUPFAM:SSF143113 |
| MapMan:12.2.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:62879037..62882511
Molecular Weight (calculated)
43101.0 Da
IEP (calculated)
4.008
GRAVY (calculated)
-0.985
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGEKENLDL SDLNTSLPAA AAALSAEDRV GLVNALKDKL QSLAGQHADV LESLSPNVRR RVEFLRGIQS QHDEIETKFF EERAALEAKY QKLYEPLYAK
101: RYDIVNGVVE VDGVAKEPTT ENAAEGGDSD AKGVPDFWLT ALKTNDVLTE EIQERDEPVL KYLKDIKWSR IDDPKGFKLE FFFDTNPFFK NSVLTKSYHM
201: VDEDDPILEK AIGTEIEWYP GKNVTQKILK KKPKKGSKNT KPITKTEECE SFFNFFSPPQ VPEDDEDIDE EAADELQGQM EHDYDIGSTI RDKIIPHAVS
301: WFTGEAVQAE DFDDMGDGDE DDDDEDDDDD DEEDDEDEDD DEDEDDDEEE LNKPTKKVAG KPKGPSKGGA QGNAEQPTEC KQQ
101: RYDIVNGVVE VDGVAKEPTT ENAAEGGDSD AKGVPDFWLT ALKTNDVLTE EIQERDEPVL KYLKDIKWSR IDDPKGFKLE FFFDTNPFFK NSVLTKSYHM
201: VDEDDPILEK AIGTEIEWYP GKNVTQKILK KKPKKGSKNT KPITKTEECE SFFNFFSPPQ VPEDDEDIDE EAADELQGQM EHDYDIGSTI RDKIIPHAVS
301: WFTGEAVQAE DFDDMGDGDE DDDDEDDDDD DEEDDEDEDD DEDEDDDEEE LNKPTKKVAG KPKGPSKGGA QGNAEQPTEC KQQ
001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ
Arabidopsis Description
NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.