Factsheet for Os06t0149400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

cytosol: 12569397
nucleus: 12569397
cytosol: 15980199

nucleus: 18022940
cytosol: 19685898
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

gfp PMID: 12569397 doi

A Dong, Y Zhu, Y Yu, K Cao, C Sun, WH Shen

Institut de Biologie Moléculaire des Plantes du CNRS, Université Louis Pasteur de Strasbourg, 12 rue du Général Zimmer, 67084 Strasbourg Cédex, France.

gfp PMID: 15980199 doi

A Dong, Z Liu, Y Zhu, F Yu, Z Li, K Cao, WH Shen

State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200433, People's Republic of China.

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G096300.1	Wheat	nucleus	87.3	86.39
TraesCS4A01G401100.1	Wheat	nucleus	86.77	85.86
TraesCS7A01G102400.1	Wheat	nucleus	86.51	85.38
Zm00001d045352_P002	Maize	extracellular, mitochondrion	84.66	84.21
OQU75826	Sorghum	nucleus	84.13	83.46
Zm00001d036177_P001	Maize	nucleus	77.78	80.11
HORVU1Hr1G048890.1	Barley	nucleus	40.21	80.0
GSMUA_Achr7P09020_001	Banana	nucleus	73.02	74.39
GSMUA_Achr6P00890_001	Banana	nucleus	71.43	72.97
VIT_09s0002g02330.t01	Wine grape	nucleus	73.55	72.97
KRH23302	Soybean	nucleus	64.02	72.67
VIT_11s0016g02050.t01	Wine grape	nucleus	73.81	72.28
Os06t0611700-00	Rice	nucleus	49.47	71.1
Os05t0539700-01	Rice	nucleus	67.46	70.05
Os01t0711800-00	Rice	nucleus	54.5	69.36
Solyc03g121700.2.1	Tomato	nucleus	67.99	69.09
HORVU7Hr1G064790.1	Barley	nucleus	15.34	68.24
HORVU7Hr1G064820.1	Barley	nucleus	15.34	68.24
KRH10020	Soybean	nucleus	65.87	68.03
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	73.02	67.98
PGSC0003DMT400006378	Potato	nucleus	44.97	67.73
Os05t0235600-00	Rice	nucleus	21.69	65.6
GSMUA_Achr10P...	Banana	endoplasmic reticulum	73.02	64.94
CDX97517	Canola	nucleus	42.06	57.61
Bra027399.1-P	Field mustard	nucleus	41.8	57.25
HORVU4Hr1G081230.2	Barley	nucleus	15.61	56.73
HORVU2Hr1G066940.1	Barley	nucleus	12.43	56.63
CDY23642	Canola	nucleus	43.65	56.12
AT3G13782.2	Thale cress	cytosol	45.5	54.26
TraesCS3A01G357000.1	Wheat	mitochondrion	33.33	51.01
Os02t0576700-01	Rice	extracellular	19.05	28.57
Os04t0459700-02	Rice	nucleus	19.31	28.19
HORVU2Hr1G033000.1	Barley	cytosol	15.08	23.46

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	EntrezGene:4340137	EMBL:AK071177	ProteinID:BAD68630.1	ProteinID:BAD69039.1
ProteinID:BAF18730.1	ProteinID:BAS96173.1	ncoils:Coil	ProteinID:EEE65092.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:NAP-like_sf	InterPro:NAP_family	EnsemblPlantsGene:Os06g0149400	EnsemblPlants:Os06t0149400-01	PFAM:PF00956
PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	UniProt:Q5VND6	SUPFAM:SSF143113	UniParc:UPI0000457F25	RefSeq:XP_015644392.1
SEG:seg	:	:	:	:	:

Description

nucleosome assembly protein 1-like protein 1, Nucleosome assembly protein 1;1, NAP1-like protein 1Similar to Chitinase A. (Os06t0149400-01)

Coordinates

chr6:+:2558017..2562216

Molecular Weight (calculated)

42639.7 Da

IEP (calculated)

4.078

GRAVY (calculated)

-0.994

Length

378 amino acids

Sequence
(BLAST)

001: MGGDKENLDL SDLNASLPAA AAALSAEDRA GLVNALKDKL QSLAGQHTDV LEALSPNVRK RVEYLREIQG QHDEIELKFF EERAALEAKY QKLYEPLYTK
101: RYNIVNGVVE VDGGNDEPAS ENAAEGKDAD AKGVPDFWLT AMKTNEVLSE EIQERDEPAL KYLKDIKWAR IDDPKGFKLD FFFDTNPFFK NSVLTKTYHM
201: VDEDEPILEK AIGTEIEWYP GKNLTQKILK KKPKKGSKNA KPITKTEVCE SFFNFFSPPQ VPDDDEDIDE DTADELQGQM EHDYDIGTTI RDKIIPHAVS
301: WFTGEAVQAE DFDDMEDDEE DDEDDDEDEE EEEEDEDEDE DDEEEKSKPK KKSAGKPKLP SKGGAQGGAD QPADCKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.