Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0262900-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | Os03t0262900-02 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G323500.1 | Wheat | cytosol | 74.13 | 75.89 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 74.13 | 75.89 |
| TraesCS2B01G342400.1 | Wheat | cytosol | 72.97 | 74.7 |
| EES12291 | Sorghum | cytosol | 70.27 | 70.82 |
| Os02t0576700-01 | Rice | extracellular | 64.86 | 66.67 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 21.62 | 64.37 |
| GSMUA_Achr4P00490_001 | Banana | cytosol | 59.46 | 60.16 |
| GSMUA_Achr10P... | Banana | nucleus | 59.07 | 59.53 |
| GSMUA_Achr7P21000_001 | Banana | cytosol | 56.76 | 58.33 |
| AT1G18800.1 | Thale cress | cytosol | 56.76 | 57.42 |
| CDX83813 | Canola | cytosol | 55.6 | 56.92 |
| VIT_14s0108g00510.t01 | Wine grape | cytosol | 54.05 | 56.91 |
| GSMUA_Achr6P10690_001 | Banana | nucleus | 55.98 | 56.86 |
| CDX96698 | Canola | cytosol | 55.21 | 56.52 |
| Solyc02g067370.2.1 | Tomato | nucleus | 54.05 | 55.12 |
| KRH65521 | Soybean | cytosol | 21.24 | 55.0 |
| KRH63352 | Soybean | nucleus | 55.21 | 54.58 |
| KRH54545 | Soybean | nucleus | 55.6 | 54.55 |
| Bra016541.1-P | Field mustard | cytosol | 49.03 | 54.27 |
| PGSC0003DMT400017852 | Potato | cytosol | 52.9 | 53.73 |
| KRH03467 | Soybean | nucleus | 52.51 | 52.71 |
| KRH75776 | Soybean | cytosol | 19.3 | 52.63 |
| KRH56918 | Soybean | nucleus | 51.74 | 52.34 |
| CDY26724 | Canola | cytosol | 48.65 | 49.8 |
| KRH65520 | Soybean | nucleus | 20.46 | 48.18 |
| CDY19242 | Canola | cytosol | 47.49 | 47.49 |
| Bra025687.1-P | Field mustard | cytosol | 42.08 | 46.78 |
| AT1G74560.3 | Thale cress | cytosol | 47.49 | 46.59 |
| KRH49525 | Soybean | cytosol | 22.78 | 35.98 |
| Os01t0711800-00 | Rice | nucleus | 24.32 | 21.21 |
| Os06t0611700-00 | Rice | nucleus | 20.46 | 20.15 |
| Os06t0149400-01 | Rice | nucleus | 28.19 | 19.31 |
| Os05t0539700-01 | Rice | nucleus | 25.48 | 18.13 |
| Os05t0235600-00 | Rice | nucleus | 8.49 | 17.6 |
Protein Annotations
| MapMan:12.2.8 | Gene3D:3.30.1120.90 | EntrezGene:4336046 | EMBL:AK102874 | ProteinID:BAF14900.1 | ProteinID:BAS89535.1 |
| ProteinID:CAD40908.1 | ProteinID:CAD40978.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:NAP-like_sf | InterPro:NAP_family | EnsemblPlantsGene:Os04g0459700 | EnsemblPlants:Os04t0459700-02 | PFAM:PF00956 | PANTHER:PTHR11875 |
| PANTHER:PTHR11875:SF68 | UniProt:Q7X7C9 | SUPFAM:SSF143113 | UniParc:UPI00001B0BAF | RefSeq:XP_015633828.1 | SEG:seg |
Description
Similar to H0219H12.3 protein. (Os04t0459700-01);Nucleosome assembly protein (NAP) family protein. (Os04t0459700-02)
Coordinates
chr4:-:22943177..22946874
Molecular Weight (calculated)
29999.3 Da
IEP (calculated)
4.037
GRAVY (calculated)
-0.937
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEQKGKK PRTDGAEAEP VDAALLQSIE KLQEIQDEIE KVNEEACDKV LELEQKYNEV RRPVYVRRNK IIKQIPDFWL TAFLSHPMLG ELLTEDDQKI
101: FKHLESIDVD DSEDIKSGYS ITLTFSPNPY FEDTKLTKTY SFSDDEAVKV KATSIRWKKG MDIANDRAYT KKGDKRILID ESFFTWFNSE KNRSFAHGAM
201: DEVADVIKED LWPNPLKYFN NEFEEELELL DDDDEVSDDD DEEEDDEDQG EGEEDGEEN
101: FKHLESIDVD DSEDIKSGYS ITLTFSPNPY FEDTKLTKTY SFSDDEAVKV KATSIRWKKG MDIANDRAYT KKGDKRILID ESFFTWFNSE KNRSFAHGAM
201: DEVADVIKED LWPNPLKYFN NEFEEELELL DDDDEVSDDD DEEEDDEDQG EGEEDGEEN
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.